GgaINT0013487 @ galGal3
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
NA
Coordinates
chr14:13233772-13234483:-
Coord C1 exon
chr14:13234337-13234483
Coord A exon
chr14:13233890-13234336
Coord C2 exon
chr14:13233772-13233889
Length
447 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTCTTTCTCATCTCTTGTAGTGT
3' ss Score
9.07
Exon sequences
Seq C1 exon
CCCCCTAATGAATGATGGCACAAATTCTGGCAATGTTGGAAACCTCAGCTCAATGCCAACGGCTGCACCTCCTTCTAGTACCGGGGTAAGGAAAGCATGGCATGAACATGTCACTCAGGACCTGCGCAATCATTTAGTGCATAAACT
Seq A exon
GTAAGTATTCACCAAGACCACATATTTCTTCCTGAATATTTTTACACAGTTTCAGTGTTGTAGTTCTCCTAGCTGGAAAGTCGTTAATGAGAAAGTAGTGATGCTCTTGACACTGTGCCATTGATAGTGAGCCACTGTCTTTAACTCTCCTCTTCAGTTCATCCTTCTTGCTCGTTAAGGGATGGAGTAGTTTATATGGCTAGTAAATTTGTTCTGCTGTAGTAAACAGAAGTATTTGGATTCTAGATTGTCAAACCTCACATTCTTTTATCACTGAATTTGCTTTAAACTTGCGGGGGATAATACAACATAGATATTATTTTCATCAGTTTTGATGCACTTCTACATCTCTGATGTATACAGGAATGTGCTGAGTGAAGGTTATAAAGCTGCATAGAATTACCAGTTTTTCTATGAAGAATTTTTCTTCTTTCTCATCTCTTGTAG
Seq C2 exon
TGTCCAAGCCATCTTCCCCACTCCGGATCCGGCAGCACTGAAGGATCGCCGCATGGAGAACTTGGTGGCTTATGCAAGGAAAGTTGAAGGAGATATGTATGAATCTGCCAACAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000012587:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.870 A=NA C2=0.613
Domain overlap (PFAM):
C1:
PF0217211=KIX=PU(25.9=42.0)
A:
NA
C2:
PF0217211=KIX=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTAATGAATGATGGCAC
R:
GCTGTTGGCAGATTCATACATATCT
Band lengths:
262-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]