DreINT0051898 @ danRer10
Intron Retention
Gene
ENSDARG00000104609 | crebbpa
Description
CREB binding protein a [Source:ZFIN;Acc:ZDB-GENE-050208-439]
Coordinates
chr22:26905451-26905830:+
Coord C1 exon
chr22:26905451-26905588
Coord A exon
chr22:26905589-26905712
Coord C2 exon
chr22:26905713-26905830
Length
124 bp
Sequences
Splice sites
5' ss Seq
ACTGTCAGT
5' ss Score
0.43
3' ss Seq
TGCTTTCTGTGTGTGTTTAGGGT
3' ss Score
11.08
Exon sequences
Seq C1 exon
TCCGGTGATGCCAGACGGCTCTACAGTAGGCAATCTGAGTAACCTGCCCACTGCGGCCCCTCTGTCAGCCACCGGTGTGAGGAAAGCCTGGCATGAGCACGTCACTCAGGACCTCCGCAATCACCTTGTACACAAACT
Seq A exon
GTCAGTAATCACTGCTCTTAATGTACACACACACAGTTGCAAATAAAAATATTCATTATACATTCATTAGTATGAGGGTTGAGTCACTTTAAATAAAGCAGTCCTGCTTTCTGTGTGTGTTTAG
Seq C2 exon
GGTTCAGGCCATCTTCCCCACACCAGACCCTGCTGCCCTGAAGGACCGACGAATGGAGAACTTGGTGGCGTACGCACGAAAAGTGGAAGGGGACATGTACGAGTCCGCCAACAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104609:ENSDART00000158756:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.840 A=NA C2=0.338
Domain overlap (PFAM):
C1:
PF0217211=KIX=PU(25.9=44.7)
A:
NA
C2:
PF0217211=KIX=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACGGCTCTACAGTAGGC
R:
CTGTTGGCGGACTCGTACATG
Band lengths:
242-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]