GgaINT0013487 @ galGal4
Intron Retention
Gene
ENSGALG00000007762 | CREBBP
Description
CREB binding protein [Source:HGNC Symbol;Acc:HGNC:2348]
Coordinates
chr14:12530957-12531668:-
Coord C1 exon
chr14:12531522-12531668
Coord A exon
chr14:12531075-12531521
Coord C2 exon
chr14:12530957-12531074
Length
447 bp
Sequences
Splice sites
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
3' ss Seq
TTCTTTCTCATCTCTTGTAGTGT
3' ss Score
9.07
Exon sequences
Seq C1 exon
CCCCCTAATGAATGATGGCACAAATTCTGGCAATGTTGGAAACCTCAGCTCAATGCCAACGGCTGCACCTCCTTCTAGTACCGGGGTAAGGAAAGCATGGCATGAACATGTCACTCAGGACCTGCGCAATCATTTAGTGCATAAACT
Seq A exon
GTAAGTATTCACCAAGACCACATATTTCTTCCTGAATATTTTTACACAGTTTCAGTGTTGTAGTTCTCCTAGCTGGAAAGTCGTTAATGAGAAAGTAGTGATGCTCTTGACACTGTGCCATTGATAGTGAGCCACTGTCTTTAACTCTCCTCTTCAGTTCATCCTTCTTGCTCGTTAAGGGATGGAGTAGTTTATATGGCTAGTAAATTTGTTCTGCTGTAGTAAACAGAAGTATTTGGATTCTAGATTGTCAAACCTCACATTCTTTTATCACTGAATTTGCTTTAAACTTGCGGGGGATAATACAACATAGATATTATTTTCATCAGTTTTGATGCACTTCTACATCTCTGATGTATACAGGAATGTGCTGAGTGAAGGTTATAAAGCTGCATAGAATTACCAGTTTTTCTATGAAGAATTTTTCTTCTTTCTCATCTCTTGTAG
Seq C2 exon
TGTCCAAGCCATCTTCCCCACTCCGGATCCGGCAGCACTGAAGGATCGCCGCATGGAGAACTTGGTGGCTTATGCAAGGAAAGTTGAAGGAGATATGTATGAATCTGCCAACAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007762:ENSGALT00000039566:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.650
Domain overlap (PFAM):
C1:
PF0217211=KIX=PU(25.9=42.0)
A:
NA
C2:
PF0217211=KIX=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCCTAATGAATGATGGCAC
R:
GCTGTTGGCAGATTCATACATATCT
Band lengths:
262-709
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]