MmuINT0042159 @ mm9
Intron Retention
Gene
ENSMUSG00000022521 | Crebbp
Description
CREB binding protein [Source:MGI Symbol;Acc:MGI:1098280]
Coordinates
chr16:4125645-4126613:-
Coord C1 exon
chr16:4126467-4126613
Coord A exon
chr16:4125763-4126466
Coord C2 exon
chr16:4125645-4125762
Length
704 bp
Sequences
Splice sites
5' ss Seq
ACTGTATGT
5' ss Score
5.19
3' ss Seq
AGAATACATTGTTCTTTCAGCGT
3' ss Score
6.25
Exon sequences
Seq C1 exon
TCCACTGATGAATGATGGTTCAAACTCTGGTAACATTGGAAGCCTCAGCACGATACCTACAGCAGCGCCTCCTTCCAGCACTGGTGTTCGAAAAGGCTGGCATGAACATGTGACTCAGGACCTACGGAGTCATCTAGTCCATAAACT
Seq A exon
GTATGTAACCCTTGAGATCCAGAGTCACATTTTGTGGCTGAGGAAACTGTTGAATCTTTGTGGGTGTGTAGATGTTTGATGTTGTTTTTTTATCTGCATGTTGAGCCACATTTTAACAGCTCAGAGCTGTGCAGGGTCCATGCTTGTTTCAGAAAGCCATTCCCACTGCTAAGAGACCTAAGAAGGCTGACTTTCTCGGACTCTGGTCCCCATTGTGTAGTGGCATCAGAGAGCATAGAAATATGACCTGAAGCCATCCTCTTTGGTTTTGAGCTCAACCATGTTCAATGACTTGAAACTAGTTATAGAGCTCCCTAAAAATTGGGGAAATTTTGGTCTGGTAAGTACAGATAGCTTGACAGTTATTTTATGTACAGAAAGGTAATGTTTTCATACTATATGTCCTGAGTTGAAATGAAGTTAATCAACTATTGATTCTTCTTACTTTGATGTTTTTATAATGCATAGTTTCTAAATAGCAATTTGGAATCATACTGTTTCTTAAAATGGCATAGCACATATTTATGTTTGGTATATAGAGTCTGGGTGTGTAGATGCAAGGTTAGTATTGTTTCCCATGTCCATGACAAGAAATGAACAGTGAGATTTGGGCCTCTACAGGTAGCTAGCCATTCCTGGTTTTATTTTTTTAGTTCCCTTGTGCCACCTTGAAAGCAATTTGATAGAATACATTGTTCTTTCAG
Seq C2 exon
CGTTCAAGCCATCTTCCCAACTCCAGACCCTGCAGCTCTGAAAGATCGCCGCATGGAGAACCTGGTTGCCTATGCTAAGAAAGTGGAGGGAGACATGTATGAGTCTGCTAATAGCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022521-Crebbp:NM_001025432:8
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.900 A=NA C2=0.375
Domain overlap (PFAM):
C1:
PF0217211=KIX=PU(25.9=42.0)
A:
NA
C2:
PF0217211=KIX=FE(48.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCACTGATGAATGATGGTTCA
R:
GCTATTAGCAGACTCATACATGTCT
Band lengths:
262-966
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: