BtaINT0046520 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008232 | DAB2IP
Description
Bos taurus DAB2 interacting protein (DAB2IP), mRNA. [Source:RefSeq mRNA;Acc:NM_001144082]
Coordinates
chr11:92640365-92641814:+
Coord C1 exon
chr11:92640365-92640463
Coord A exon
chr11:92640464-92641259
Coord C2 exon
chr11:92641260-92641814
Length
796 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
3' ss Seq
CCCCGCCCATGCGTGTGTAGGAC
3' ss Score
9.35
Exon sequences
Seq C1 exon
GTGACGACGTCCTCAGGAAGCAAGTGCTTCTCCTGCCGGTCAGCAGCTGAGCGGGATAAGTGGATGGAGAACCTGCGGCGAGCCGTGCATCCCAACAAG
Seq A exon
GTGGGCCTGTGTCCCCAGCCCCCAGAGCACGGGGCAGAGGCTGCACCTGGAGCAGAGCACAGGCTCCGACTCAAGAGAGCAGAGGGCGGGGGCTCTGGAGGGGGCTGGGACTGGGGTGTGGTCGGGGCCGGAGCGGGCCATAGTGCTGGGCTCGGAAAGAGGCTGAGCTGCACACTGGGGCGGCCAGGCCAGAGAACCCAGGCTCGGTCTTTTGGATGCCGGTGTCCTGTCTGGAACTCTTGTGCCCCCTTCCCCCCGTGGCCAATGCCTGCCTAGCCCTCCATGTCTAGCTTAACCACCAGTCCCCTCGTCCAGGCAAGCACTGCCGGCCCAGGCTGGCACCCACTGCCCAGTGTTCCCACTGCCGCCAGGCCTCTCCCCAGCTGTCATCACTGCTTTTGGCCGACTCAGCCTGGAGCTGAGTCCTGGTCACCGCGCCATCACTGAGGAAGGACCTCAGCAGTACTTGTCTCCATGTGACTCTGTGGACCAGCAAGCTTCCCAAGAGCCAGTCAGTGGCCGCCATGTGCCAGGCATCGCGCTGGCCTCTTAACTTGCTCTCAGCTTGTGGACTTGCATGACAGAGGGACTTATGGCTTAGATGATCATAGATGGTTGCTTGCCCAAGGTCAGTGAGCTAGTGTACGAGGCAGAGCAGAGATCCGGCCCCATGTCCTTCAGACTCCAGAGCTGGCCCTGAGCAGTTCTGAGCGCTCTTCCCGGCTCCAGGCTGGGCAGGGGGCCAGGTGCCGGGCTCCTGGTAACTGCGCCCCTCTCCCCGCCCATGCGTGTGTAG
Seq C2 exon
GACAACAGCCGGCGTGTGGAGCACATTCTGAAGCTGTGGGTGATCGAAGCCAAGGACCTTCCGGCCAAGAAGAAGTACCTGTGCGAGCTGTGTCTGGACGACGTGTTGTACGCGCGCACCACGGGCAAGCTCAAGACCGACAACGTCTTCTGGGGCGAGCACTTCGAGTTCCACAACCTGCCGCCCCTGCGCATGGTCACCGTCCACCTGTATCGTGAGACTGACAAGAAGAAGAAGAAGGAGCGCAGCAGCTACCTGGGCCTGGTGAGCCTGCCCGCCGCCTCTGTGGCCGGCCGGCAGTTCGTGGAGAAGTGGTACCCGGTGGTGACTCCCAACCCCAAGGGCGGCAAGGGCCCCGGGCCCATGATCCGCATCAAGGCGCGCTACCAGACCATTACCATCCTGCCCATGGAGATGTACAAGGAGTTTGCCGAGCACATCACCAACCACTACCTGGGGCTCTGCGCTGCCCTCGAGCCCATCCTCAGCGCCAAGACCAAGGAGGAGATGGCGTCGGCCTTGGTGCACATCCTGCAGAGCACGGGCAAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008232:ENSBTAT00000032823:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.182 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(24.4=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGTCCTCAGGAAGCAAGTG
R:
GCTGCGCTCCTTCTTCTTCTT
Band lengths:
343-1139
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development