HsaINT0044765 @ hg19
Intron Retention
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:17294]
Coordinates
chr9:124521177-124522718:+
Coord C1 exon
chr9:124521177-124521275
Coord A exon
chr9:124521276-124522163
Coord C2 exon
chr9:124522164-124522718
Length
888 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GGACCCCCGTGCACATACAGGAC
3' ss Score
4.87
Exon sequences
Seq C1 exon
GTGACGACGTCATCAGGAAGCAAGTGCTTTTCCTGCCGGTCTGCAGCTGAGCGGGATAAGTGGATGGAGAACCTCCGGCGAGCGGTGCATCCCAACAAG
Seq A exon
GTAAGCCTGCGCCCCTCTCACCAAAGCATGGGGGATTGAAGGTAGGCTCAGATAGGAGGAAACAAGAGAGACTATCTCTGTGGTGTGGGCTGGGATTGGGGGTGGTCAGCCTGCATGGAGGCAGGGCCCGAGTGGACAATATTGGTGGACTCTGAAAGAGACGTTTGAGTTGACCAGGTTGAGACAGGTGCTGTGTGCCTCTGTTTTCTAAGCTACACATTGAGGCTGGGCTTGGGGAAATGAGTGCTGGACCCTGGGGTCCTTCTGCTGGGACCCCTTGTCCCTACTCCCCAGCCCCTGGCTGAGTTCTGCTCATCTTCCCCTTCCACCTTAGATGTCTGCCCCTCCTCCAGGTGAGGACCCCTGTCCCAGGCTGGTGCCCTCTGTGTTCCCACTGCCCCTGGGCTCCCCCATTAGGTCCTGGGAGCCCCCACTGTAATCCCTGCTTCTGTATCTGTCTCCCTAGCCGACTTGAGGGCTTGACCAAGTCCTGGTCACCATAGCCATCTCTTAAGTTACAGTACAGACCAGCATATTAAGGAAGAGTTAATAATGGCATAGCCTGTGACGTGTCAGGCGTTGTGCTGGCCTCTCTCAGTCTCGCCCTCTATGAGATGGGGGTTTTACCTTAGTGCCGTTTCATAGACAAGCAACCCAAGGCTCCAGTTAAGTTGCTTGCCCAAGGTGAGTGAGCTTCTGTGAGGTCGACCAGAGATCCAGCCCTTGTCCATCATGCCCTGCCTCATCCTGACTTAGGGCCTAGGCGCCCGCTGCCGCCTCCACCTTCAGAGCTCCTCCTGGGTCTGAGGACTCTCTCAGGCTCTGGGCTGGTTGGGGGTTGCACGTGGCACCCCCAGCTGACCACCCTGGACCCCCGTGCACATACAG
Seq C2 exon
GACAACAGCCGGCGTGTGGAGCACATCCTGAAGCTGTGGGTGATCGAGGCCAAGGACCTGCCAGCCAAGAAGAAGTACCTGTGCGAGCTGTGCCTGGACGATGTGCTCTATGCCCGCACCACGGGCAAGCTCAAGACGGACAATGTTTTCTGGGGCGAGCACTTCGAGTTCCACAACTTGCCGCCTCTGCGCACGGTCACTGTCCACCTGTACCGGGAGACCGACAAGAAGAAGAAGAAGGAGCGCAACAGTTACCTGGGCCTGGTGAGCCTACCTGCTGCCTCGGTGGCCGGGCGGCAGTTCGTGGAGAAGTGGTACCCGGTGGTGACGCCCAACCCCAAGGGCGGCAAGGGCCCTGGACCCATGATCCGCATCAAGGCGCGCTACCAAACCATCACCATCCTGCCCATGGAGATGTACAAAGAGTTCGCTGAGCACATCACCAACCACTACCTGGGGCTGTGTGCAGCCCTCGAGCCCATCCTCAGTGCCAAGACCAAGGAGGAGATGGCATCTGCCCTGGTGCACATCCTGCAGAGCACGGGCAAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848-DAB2IP:NM_032552:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.192 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(24.0=87.9),PF081746=Anillin=PU(22.6=90.9)
A:
NA
C2:
PF0016825=C2=WD(100=70.4),PF081746=Anillin=PD(75.9=87.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCATCAGGAAGCAAGTGC
R:
GGTAACTGTTGCGCTCCTTCT
Band lengths:
349-1237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)