RnoINT0044838 @ rn6
Intron Retention
Gene
ENSRNOG00000055226 | Dab2ip
Description
DAB2 interacting protein [Source:RGD Symbol;Acc:621686]
Coordinates
chr3:15038267-15039739:+
Coord C1 exon
chr3:15038267-15038365
Coord A exon
chr3:15038366-15039184
Coord C2 exon
chr3:15039185-15039739
Length
819 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
3' ss Seq
CCCAGATCCCCCTTATGCAGGAC
3' ss Score
5.26
Exon sequences
Seq C1 exon
GTAACAACATCATCAGGAAGCAAGTGTTTCTCCTGCCGGTCAGCCGCTGAACGAGATAAGTGGATGGAGAACCTGAGGCGAGCAGTGCACCCCAACAAG
Seq A exon
GTAGGCAGGCAGGCTCAGCAGGTCCAGGTACCTGCTCTTGTGGATCATGAAAGATGAGGTGAAAACCAGACACGAGGGAACAGAAACCTGAGTAGGGGCAGGGGTAGGGGCAGGGGCAGGGGCAGGGGCAGGGGCAAGTAGACCTGGAAGGAACTGGAGTTGCTGAGCTATGCCAGCTGTTGGGTCCTTCTTCCGACAGCTGAGTTTCTCCCTTTAGAAGTCGGGTCTTGCCCAGAACCACTTCCTCCTAGCCAACTGTGGCACTTCTGTTCTAGTTCCAACATTCACCCTTCTTCACATGGTGCGCCTTGTGTCCTCTTACATTCTACTGTCCCATCTGGTTGGGGCCCTGACTACAATCAAGGCTGTTAGGGCTCCTGTGTCTTATCTTCCCAGATGACCTGTCGATCTAAATTAAGTCCTGGTTACCATGACATCACTAAAAAAGTGGTCTTAGCGTCAGTCATCTCTAAAGTTGCTTTGTAGACCAGGAGACTGAGTAACTGGTACCACAGCCTGTAGAGGAAAGCGCTGTGCTGGCTCCCCCCACCTCCACCCCACCCCATCTCGCTCAGAGGCAGGGCTACTTTAGTGCTGCTTTCTGGGAGAGCAAGCCTGGGCCCAGGGGGCTTGTGTGGGTGAGCTAGCTGGTGATCAGTAGAGCAGACTAGTTGAAGCCAGATCCATGGTGTCTCCCCGTCCTTACCCATGTGCCTGACCACTCAGTTCCTCCTGGATTTTGGAGGGCTCCTAGACTCCGGGCTGGCCAGGTAGATAGATAACAGCCCCAACTGACCACCCCAGATCCCCCTTATGCAG
Seq C2 exon
GACAACAGCCGGCGTGTGGAGCACATCCTGAAGCTATGGGTGATTGAGGCCAAGGATCTGCCAGCCAAGAAGAAGTATCTGTGTGAACTGTGCCTGGACGATGTACTGTATGCCCGTACCACGGGCAAGCTCAAGACGGACAATGTCTTCTGGGGAGAGCACTTCGAGTTCCACAACCTGCCGCCCCTGCGCACAGTCACTGTCCACCTGTACCGGGAAACTGACAAGAAGAAGAAAAAGGAACGCAACAGCTACCTGGGCCTGGTGAGCCTGCCTGCCGCCTCGGTGGCTGGGCGGCAGTTTGTGGAGAAGTGGTACCCAGTGGTGACACCTAATCCCAAGGGTGGCAAAGGCCCTGGGCCCATGATCCGAATCAAGGCACGCTACCAGACCATCACCATCTTGCCTATGGAGATGTACAAGGAGTTTGCTGAGCACATCACTAACCACTACCTGGGGCTGTGTGCAGCCCTTGAGCCCATCCTCAGTGCCAAGACCAAGGAGGAGATGGCGTCGGCTCTGGTGCACATCCTGCAGAGCACAGGCAAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000055226:ENSRNOT00000080760:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.244 A=NA C2=0.018
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(22.0=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGATGGAGAACCTGAGGC
R:
ACCACTTCTCCACAAACTGCC
Band lengths:
357-1176
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]