MmuINT0046474 @ mm10
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35708814-35710372:+
Coord C1 exon
chr2:35708814-35708912
Coord A exon
chr2:35708913-35709817
Coord C2 exon
chr2:35709818-35710372
Length
905 bp
Sequences
Splice sites
5' ss Seq
AAGGTACCT
5' ss Score
8.49
3' ss Seq
TCCAGACCCCTCTTATGCAGGAC
3' ss Score
5.19
Exon sequences
Seq C1 exon
GTGACAACATCATCAGGAAGCAAGTGTTTTTCCTGCCGGTCAGCCGCTGAGCGCGATAAGTGGATGGAGAACCTGAGGCGAGCAGTGCACCCCAACAAG
Seq A exon
GTACCTGTACCTGCTCCTGTGGGGCATGAAAGAGGAGGCCAAGCCCAGACTCGGGAACAGGCATGACTCCTAAGTAGGGGCAGGGGCAACTCGAGGGAACAGGCATGACTCCTGAGTAGGGGCAGGGGGAACTCGAGGGAACGGGTGTGACTCCTGAGTAGGGTCAGGGGCAACTCGAGGGAACGGGCATGACTCCTGAGTAGGGGCAGGGGCAACTCGAAGGAACGGGTATGACTCCTGAGTAGGGCAGGGGGCAAGCGGGCCTGGGACCAATTGGAGTTGCTGAGCTATGACAGCTGTTAGGTACTTCTGACAGCTGGGTTTCCCTTTAGAAGTGGGGTCCTCAGAACCACTTCCTTCTAGCCAACCACAGTACTTCTGTTCTAGCTCCAACATTCACACCCTTCTTCACATGGTGCCCCTTGTGTCCTCTTACATCCTACTGTCCCTGGACTTTTCCATCTGCTTGGAGTCCTAACTGCAATCCAGGCTGTTAGGGCTCCTGTGTCTTACCTTCCCAGATGACTGTGGGTCTAAGTTAAGTCCTGGTTACCATGACATCACTAAAGAAGGGGTCTTAGCAGCAGTCATCTCTAAAGTTGCTTTGTAGACCAGGAGGCTGAGGAACTGGTGCCACCACCTGTAAGGGGGAAGCACTGTGCTGGCTTCCTTCCCCTGTCTCACCTGGAGGCAGGGCTACTTTAGTACTGCTTTCTGGGAAAGCAAGCCTGGGCCCAGGGGGCTTACATTGGTAAGCCAGCTAGTGATCAGGAGGGCAGACAAGTTGAAGCCACATACATCTCACCACTCAGTTCATCCTGGAATTTGGAGGAATCCTAGGCTCTGGGCTGGCCAGGTAGATAGGTAACAGCCGCAACTGACCACTCCAGACCCCTCTTATGCAG
Seq C2 exon
GACAACAGCCGGCGTGTGGAGCATATCCTGAAGCTGTGGGTGATTGAGGCCAAGGATCTGCCGGCCAAGAAGAAGTATCTATGTGAACTGTGCCTGGACGATGTGCTGTATGCCCGTACCACAAGCAAGCTCAAGACGGACAATGTCTTCTGGGGAGAGCACTTTGAGTTCCATAACCTGCCGCCTCTACGCACAGTCACTGTGCACCTGTATCGGGAGACTGACAAGAAAAAGAAAAAGGAACGCAACAGCTACCTGGGCCTGGTGAGCCTGCCTGCCGCCTCTGTGGCTGGGCGGCAGTTTGTGGAGAAGTGGTACCCAGTGGTGACACCCAACCCCAAGGGTGGCAAAGGCCCTGGGCCCATGATCCGAATCAAGGCACGCTACCAGACCGTCAGCATCTTGCCTATGGAGATGTACAAGGAGTTTGCGGAGCACATCACTAACCACTACCTGGGGCTGTGCGCAGCCCTGGAACCCATCCTCAGTGCCAAGACCAAGGAGGAGATGGCGTCGGCTCTGGTGCACATCCTGCAGAGCACGGGAAAGGTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883:ENSMUST00000112983:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.198 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(35.8=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGATGGAGAACCTGAGGC
R:
ACCACTTCTCCACAAACTGCC
Band lengths:
357-1262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types