GgaINT0124828 @ galGal4
Intron Retention
Gene
ENSGALG00000001419 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr17:8579808-8582524:+
Coord C1 exon
chr17:8579808-8579906
Coord A exon
chr17:8579907-8581969
Coord C2 exon
chr17:8581970-8582524
Length
2063 bp
Sequences
Splice sites
5' ss Seq
AAGGTAGTG
5' ss Score
5.56
3' ss Seq
CTTTGCTTCTTTTTTTCTAGGAC
3' ss Score
12.56
Exon sequences
Seq C1 exon
GTGACGACTTCATCAGGAAGTAAGTGCTTCTCGTGTCGTTCTGCAGCAGAGCGAGATAAATGGATGGAAAACCTGCGGCGTGCCGTGCACCCAAATAAG
Seq A exon
GTAGTGGCTATGAGGAATTGCCTCTGTTAGAGTTCAGTTCCTCGTTATTACATTTTATAGCCCAGTGCATAGTAGCAGCAGGGGACGTATTGTCATTTCAGTGAGTAAGTGTAATTGTGGGTCAGCCTTTTTCCATTTGCTTTCTTCCACAATTATATTTACAGGAAAGTGCCAATTATTTCTTCCCTCTTTTCTCAGCACGTGCAGCTTCAGCTTTTGCTGAGACATGATCAGCTCTCAAGAATCTTCAGTCTTGCTCTGTTACTAATGGTACTTGCCAGTTAAGTAGGACTCCCTGCGAAGTGCTGGGACAGATGGCCAGTAGCTGCCAGCAGAACCAGGGAATAGTATGAAGAGTTCACACATCACATTTTCTGACTCTGGCAATTCTTGCATTGTCAACTTCAGTGATGGAGATATTCAGGAGGCACATGGCAGTGAGTTCTTGGAGGTGATAGTGGAACATAGCTTTCACTTTTATGGGCAGTTGTGTGTTTTTATGACCCACTAAGACTAAATATGTCCTAAAATAAAGTCTACAGCTGCATCTCCCTCTCTCTGCACTGGAGTTAGCTAACAAAGATTGATCAAGGCTCATCAGCTGCAGGATTTCACAGCTGATGAGCTCCATCAACAAGTCATTTTCTGCTGATCAGAGAAGACACAAACGATGGGATCCTGTGAATTCATTCTTTGCATCAGAGACACATAACTGCATTACAGGTTAGCTCTGGGCCTGGCAGGCTGCTAACAGAGCCCCAGCCCTCCATGGCTGAGCTCGTTGTTCCTCGTTCAGCACAAGAGATTTCCTTCTTCAGAATGGGAGCGGCAGAGGGAGAGTTGGGCTTCTGCCCCTCGCAGTGCATCCTGCACGTGGAGTTCAGTGCTCCAGTGCCTTTCTGAGCACAGCGGCCCGGCAGCAATGGCCTGAGTGAGCTGTGAGGTTTGGAAGGCCGCACTGTGAGAAAAGCCCGAGGAATGTGAGGGAGGGAAGGGCACTCAGTGAGTCTTTGAGATGCAGCATTCAGTGGAAATGCATCTGGAAGGATGCCCTCATCTTGAAACATGCCGCTAGCTGATGGCTAACTTTCCATCTTTGTTTGAGTTTGGAGACAATAAACTCTCAGTGTCAGAGTTGATATTTCTGTCAGGAATTCGTTGTTCTTGTATAGTTCCTGTGTGTACTTCCTGAACCTACAGTACCCCATTGAGGGCTCCCATCAGAGATGTTCCTGCCCGGACTGCAAACCCAAGCAGAGTAAGCCTTGGTTACAATTTCAGAGGGGCCTTCCAAACCAGACAGGTTACTGCAGAGCCCGTCAGTCACTGCTGCAAATGCCCCTGGGTGTTCTTCCAGCGTGAGGTCAGCGTTGCCAGGAGCTGTGTCAGATCCACAGTATCCCTTGCTACGTGCTATCTAAATGACACCAGGCCAGATTTCTATTTCTGAATTGTAATGATTCTGCTGTGTGACTCACTCTGTCCTCTCCATCTCTTAGCTGGACTTCTGCCTTAAAATACTGAGGTTTTGTAAATGCTTCTTCCATGTCAGAGGTAGCTGTGTTCTGGCCATGGATGGGCGATCCCTGGGTGTGCATTGGGGTCCTTTTGCTGTTGCTCTGTTACACTCAAAAAACAAGCCAAAAATGTATTGCAGTGCTGCTGCAAAGTAGTTGTACAGATCAGGGAGGTGGTAGTGTGGTACCTGTGACGTAGGTGTTGCTTTGCAAAGGCCATCAGTCATTGGTTGGGTTCATTTGGGTTTCTTTTGAGGTCCTCTTGGCAGTGGATTGGATTTGGCCCATTTGTGATGCAGAGTTTTATCTTCCTTGTTGCTTATATTAATTGGCACCAGCAGATGTGGAGAGCACGGTGATATTTGGAAAATTAACATAAGTAGCATTATTATGCAAATTCCTGAGAGCCAGTATTTCCTTAAAATAAAATGTAATTAAGCCTCTGCTCATTTAGCACATCTGAAATAATTAACACCTATCTCCAGTTTTGTTGTGCATGGCTTTGTTTTTCTTCTTGACCTTTTTTCTTTGCTTCTTTTTTTCTAG
Seq C2 exon
GACAACAGCAGAAGGGTAGAGAATATGTTGAAGTTATGGATTATCGAAGCCAAGGACCTGCCAGCTAAGAAAAAGTACTTGTGTGAATTATGCCTGGATGATGTTCTTTATGCACGAACTACCTGTAAATTGAAAACTGATAATGTCTTCTGGGGGGAGCACTTTGAATTTAATAACCTCCCATCGCTCAAAAACATTACGGTGCACTTATACAAAGAGACTGACAAGAAGAAAAAGAAGGACAAGACCAATTTCATTGGGCAAGTGAACATCCCCGTCAGCTCTGTCACAGGGCGGCAGTTTGTGGAGAAGTGGTACCCTGTGGTCAGCCCCAACCCCGGGAAGGGCAAATCCCCGGGGCCGATGATCCGCATCAAGTCGCGCTACCAGAGCATGAGCATTCTTCCCATGGAGATGTACAAAGAGTTCGCTGAGTACATCACTAACAACTACATGGTGCTGTGCTCGGTGCTGGAGCCCTCGCTGAGCGTGAAGAACAAAGAGGAGATGGCATCTGCGCTGGTGCACATCCTGCAGAGCACAGGCAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001419:ENSGALT00000002162:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.242 A=NA C2=0.038
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(26.4=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]