HsaINT0044765 @ hg38
Intron Retention
Gene
ENSG00000136848 | DAB2IP
Description
DAB2 interacting protein [Source:HGNC Symbol;Acc:HGNC:17294]
Coordinates
chr9:121758898-121760227:+
Coord C1 exon
chr9:121758898-121758996
Coord A exon
chr9:121758997-121759884
Coord C2 exon
chr9:121759885-121760227
Length
888 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
3' ss Seq
GGACCCCCGTGCACATACAGGAC
3' ss Score
4.87
Exon sequences
Seq C1 exon
GTGACGACGTCATCAGGAAGCAAGTGCTTTTCCTGCCGGTCTGCAGCTGAGCGGGATAAGTGGATGGAGAACCTCCGGCGAGCGGTGCATCCCAACAAG
Seq A exon
GTAAGCCTGCGCCCCTCTCACCAAAGCATGGGGGATTGAAGGTAGGCTCAGATAGGAGGAAACAAGAGAGACTATCTCTGTGGTGTGGGCTGGGATTGGGGGTGGTCAGCCTGCATGGAGGCAGGGCCCGAGTGGACAATATTGGTGGACTCTGAAAGAGACGTTTGAGTTGACCAGGTTGAGACAGGTGCTGTGTGCCTCTGTTTTCTAAGCTACACATTGAGGCTGGGCTTGGGGAAATGAGTGCTGGACCCTGGGGTCCTTCTGCTGGGACCCCTTGTCCCTACTCCCCAGCCCCTGGCTGAGTTCTGCTCATCTTCCCCTTCCACCTTAGATGTCTGCCCCTCCTCCAGGTGAGGACCCCTGTCCCAGGCTGGTGCCCTCTGTGTTCCCACTGCCCCTGGGCTCCCCCATTAGGTCCTGGGAGCCCCCACTGTAATCCCTGCTTCTGTATCTGTCTCCCTAGCCGACTTGAGGGCTTGACCAAGTCCTGGTCACCATAGCCATCTCTTAAGTTACAGTACAGACCAGCATATTAAGGAAGAGTTAATAATGGCATAGCCTGTGACGTGTCAGGCGTTGTGCTGGCCTCTCTCAGTCTCGCCCTCTATGAGATGGGGGTTTTACCTTAGTGCCGTTTCATAGACAAGCAACCCAAGGCTCCAGTTAAGTTGCTTGCCCAAGGTGAGTGAGCTTCTGTGAGGTCGACCAGAGATCCAGCCCTTGTCCATCATGCCCTGCCTCATCCTGACTTAGGGCCTAGGCGCCCGCTGCCGCCTCCACCTTCAGAGCTCCTCCTGGGTCTGAGGACTCTCTCAGGCTCTGGGCTGGTTGGGGGTTGCACGTGGCACCCCCAGCTGACCACCCTGGACCCCCGTGCACATACAG
Seq C2 exon
GACAACAGCCGGCGTGTGGAGCACATCCTGAAGCTGTGGGTGATCGAGGCCAAGGACCTGCCAGCCAAGAAGAAGTACCTGTGCGAGCTGTGCCTGGACGATGTGCTCTATGCCCGCACCACGGGCAAGCTCAAGACGGACAATGTTTTCTGGGGCGAGCACTTCGAGTTCCACAACTTGCCGCCTCTGCGCACGGTCACTGTCCACCTGTACCGGGAGACCGACAAGAAGAAGAAGAAGGAGCGCAACAGTTACCTGGGCCTGGTGAGCCTACCTGCTGCCTCGGTGGCCGGGCGGCAGTTCGTGGAGAAGTGGTACCCGGTGGTGACGCCCAACCCCAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000136848:ENST00000394340:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=NA C2=0.020
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(24.8=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTCATCAGGAAGCAAGTGC
R:
GGTAACTGTTGCGCTCCTTCT
Band lengths:
349-1237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development