DreINT0054618 @ danRer10
Intron Retention
Gene
ENSDARG00000069484 | dab2ipa
Description
DAB2 interacting protein a [Source:ZFIN;Acc:ZDB-GENE-081104-516]
Coordinates
chr8:12145032-12146389:-
Coord C1 exon
chr8:12146291-12146389
Coord A exon
chr8:12145587-12146290
Coord C2 exon
chr8:12145032-12145586
Length
704 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
3' ss Seq
TGTGTTTATATTTTCTGCAGGAT
3' ss Score
10.32
Exon sequences
Seq C1 exon
GTAACTACTTCAACAGGAAGCAAATGCTTCTCATGCCGGTCGGCAGCCGAGAGAGACAAATGGATGGAGAATTTGAGACGTGCTGTGCATCCCAATAAG
Seq A exon
GTAAACTGGATGATTCATCTGAATCATGGGTAATTTGAGAAAGGGATAAGGTTTAAGCCAGTCAGCGTGTTGCTTTTGCTCATGTATCCCACCTCACATATCGACAGATTTTATAATCTCCAATATTAATATTAATATTAATATCCCCAAACTGTTTCTGTTCACACATACAATTATTGTCACATGGTTATCTGGTTGTTCTATCATGGTCATTTATTTATTTATTTATTTATTTATTTATTTATTTATTGGACTTTTACGGTTATTCGTCACACGCACTCAAAAAATGAAGAAGTAAGCTATCACTTTAAAGCCAGGGTGCCCAAACTTGGTAGGAGTCAGTGTCCTGCAGAGTTAAGCTTCTACACACCTACCAGAAGTTTCTAGTATGATTAGTAAGAGCTTTGATTAGCTGGTCCTGGTACTGTATATCTAGTGTAATTGGGGTTGGAGTTAAACTCTGCTGGACACCAGCCCTTCAGGACTGAGTTTGGGCACCCCTGCTTTAAAGGCAAATTAAAAGATGCGCATTAAAGGTATAGAATTCCCAAAAATGAAACATTGCTGCAGATTTCAGGCCTTCGAAGATGTAGGTGACTTTTTTCTTCAGTAGAAAATTTGAAAAGATTTCATTACATGCAAGTCAAGTCAACACTTACTTTGAGAGAAAAAAAAAACATGAACTGTGTTTATATTTTCTGCAG
Seq C2 exon
GATAACACCCGTCGGGTGGAAAATATGCTGAAATGTTGGATTATCGAAGCCAAGGACTTGCCAGCAAAGAAAAAATACTTCTGTGAACTCTGTCTGGACGACACATTATACGCACGGACTACCTGCAAACTCAAAACGGACAACGTTTTCTGGGGCGAACACTTTGAGTTCAACAACCTGCCCTCGGTCAAGAGCATCACCGTTCATCTTTACAAGGAAACGGACAAAAAGAAAAAGAAGGACAAAAATAATTATGTGGGCCTGGTCAATATTCCCATTGCGACAGTCACCGGGCGGCAATTTGTGGAAAAATGGTATTCGGTTAGTACGCCGAATCCTAACAAAGGGAAGAGTCCGGGACCCATGGTCCGCATGAAGTCCCGCTATCAGAGCATGAGCATCCTCCCCATGGAGCTTTACAAGGAGTTTGCAGAGTATATTACTAATAACTATATGCTAATGTGCTCAGTGCTGGAGCCGGCGCTCAGTGTGAAGAACAAGGAGGAGATGGCGTGTGCACTTGTGCATATCTTACAAAGCACAGGCAAGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000069484:ENSDART00000135812:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=NA C2=0.051
Domain overlap (PFAM):
C1:
PF0016924=PH=PD(25.7=87.9)
A:
NA
C2:
PF0016825=C2=WD(100=43.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGCCGAGAGAGACAAATGG
R:
GGTGACTGTCGCAATGGGAAT
Band lengths:
348-1052
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]