Special

BtaINT0047243 @ bosTau6

Intron Retention

Gene
Description
Bos taurus DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) (DCUN1D3), mRNA. [Source:RefSeq mRNA;Acc:NM_001015518]
Coordinates
chr25:18742786-18745540:-
Coord C1 exon
chr25:18745005-18745540
Coord A exon
chr25:18743428-18745004
Coord C2 exon
chr25:18742786-18743427
Length
1577 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
GCCCCTCCTTCCTGTTGCAGGAA
3' ss Score
12.59
Exon sequences
Seq C1 exon
GTTGGCTGGCTCCTCTGGCTGATGGCATGTTGAGGCACATGGGCCAGTGGCAACGAGGGCATCCAATCCAGAGAGGGCCGCTCTAGAGGCCAGGCCACCAGCATCATGGGCCAGTGTGTCACCAAGTGTAAGAATCCCTCATCAACTCTGGGTAGCAAGAATGGAGACCGTGATCCCAGCAGCAAGTCACATGGTAGGCGGAGTGCAAGCCACCGTGAGGAACAGCTGCCAACCTGTGGCAAGCCAGGTGGAGATATCCTTGTCAATGGGACCAAAAAGGCAGAGGCTGCTCCTGAGGCCTGCCAGCTGCCAACATCCTCTGGAGATGCTGGGAGGGAGCCCAAGTCAAATGCCGAGGAGTCGTCTTTGCAGAGGTTGGAAGAACTGTTCAGGCGCTATAAGGATGAACGGGAGGATGCAATTTTGGAGGAAGGCATGGAGCGCTTTTGCAATGATCTATGTGTGGACCCCACGGAATTTCGAGTGCTGCTTTTGGCTTGGAAGTTCCAGGCTGCTACCATGTGCAAATTCACCAG
Seq A exon
GTTAGTCACAAATACTTGGTGTCACCAGGTGAATAGAGGAGGAAAGAGAGCACCACTGAGCAGTGGTGCCCAGCTAGGATAGAAGTGGGCACCAACAATCCTTGCCTGAAGTTATAAATCCATGTTGCCAAGCTGCTGTCCCACCCCACTGCTATTTCAGACTTTTTTCTTTCACTCCTTTGTCAGTTCACTTACTTCCTTACTCAGTGTTTATTGTGCACCTATCATGTGTCAGGCATTGAGTGCCACTGGGGATGTGCTTGGGAGAAGGCAGTGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGACGGAGGAGCCTGGTAGGCTGCTCTCCATGGGGTCGCTAAGAGTCGGATACGACTGAGCGACTTCACTTTCACTTTTCACTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCCTGGTGGGCTGCAGTCCATGGGGTCACACAGACCCCATTGCTCTCCGAACGATACCCTTAGTCACCCTATGTGCCAATAAGGACAACTGGCCCCGGTTATCAGCTAGTGCGTGCATGCACAGTCACTCAGTCATGTCCAACTCTTTGTGACCCTGTGGACCATAGCCTGCCAGGCTCTTCTGTCTGTGGTATTTTCTGGGTAAGAATACTGGAGTGTGTTGCCATTTTCTCCTCCAGGGGATCTTCCCAACCCAGGGATCGAACCCATATCTCCTGCGTTGGCAGGCTGATTCTTTACCACTGAGCCACCTGGGAAGTCCTGTCAACCCGTAGTTGTGTCCACTGTTATCATCATGCATCCTGATAGAGATTATTTGTGGGAGACAACATGGCAGGGTCACTGCAAGGTATGGTTTGCAGAGCACTGGATTATAAGAAAGAAGAATTGACTTTGAGAACCCCTCTATAAAACTTTTAGTCCCTGGGTAGGTTACTCACAGACCTCAGATGTTATATCTTCAGAACATACAGAATCTCAAAGCACATGATCAGTGTGAGACCATGTTGTAAGCCAGAAGTGTTATATATAGATGTTAAAAAATACACATACAATTTTTGCTTTTTAGTAACAGAACTTTGATTTCTGGTGGCAGTTTCCCCAGGTTCATCCAGAATCTTTGGACTCCAAAAATTTTCCTTGGCAGTAACCAAAAATATTCCAAAACCAAACAACCCCTATAGAATCAAAAGGAAAACAGGAAGACTCCCTCGCCATCTCCAAGGAATGTCTACAGCTTAATCACTGTTGCAGAATGAGAAATGGCATGGAGCAGGAGACTTTGAGTTTAGCTTTAGAAAGATGAATAGATGAATGAATGAACTGTTACCAGCAGCCTACCATGTGCTTGGCACTATCTAGAAGTTGACTTAAACCCTACGAAGTAAGGTAGTATTCTCACCATTTGGCAGATGAAATAGGATTGCAATTAGTAGAGGAGTTGGAGTTCAAATCCCGACAGCCTCATAGTTATGCTCTTATGATACTATATCGCCTCTCAGTAAATGATATCATTTGCAATTATTAATTGTGCCCCTCCTTCCTGTTGCAG
Seq C2 exon
GAAGGAATTTTTTGACGGCTGCAAAGCAATAAGTGCAGACAGCATTGATGGGATCTGTGCACGGTTCCCTAGCCTCTTAACAGAAGCCAAACAAGAGGATAAATTCAAGGATCTCTACCGGTTTACATTTCAGTTTGGCCTGGACTCTGAAGAAGGGCAGCGGTCACTGCATCGAGAAATAGCCATTGCCCTGTGGAAACTCGTCTTTACCCAGAACAATCCTCCGGTATTGGACCAGTGGCTAAACTTCCTAACAGAGAACCCCTCGGGGATCAAGGGCATCTCCAGGGACACTTGGAATATGTTCCTTAACTTCACTCAGGTGATTGGCCCTGACCTCAGCAACTACAGCGAAGATGAGGCCTGGCCAAGTCTCTTCGATACCTTTGTGGAGTGGGAAATGGAGCGAAGGAAAAGAGAAGGGGAAGGGAGAGGCGCACTCAGCTCAGGGCCCGAGGGCTTGTGTCCCGAGGAGCAGACTTAGTGGCTCTGTCTCAGGAGCAGCAGCAAGGATCTGCCTGCTGCCCTGCAGTCAACCAAGGAATTGGACCTTTCTGAAAATTACTGAAGATCCGGATATTTTCTACTTTACACCTTTCTCTGCCTTGTATCTGAAAGGGCTCTAAAATGCTGTATCATGTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000032260:ENSBTAT00000045756:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact

Alternative protein isoforms

No structure available
Features
Disorder rate (Iupred):
  C1=0.521 A=NA C2=0.130
Domain overlap (PFAM):

C1:
NO
A:
NA
C2:
PF0355610=Cullin_binding=WD(100=74.1)


Main Inclusion Isoform:
NA


Main Skipping Isoform:


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGAGCCCAAGTCAAATG
R:
TCAGAGTCCAGGCCAAACTGA
Band lengths:
355-1932
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]