MmuINT0047291 @ mm9
Intron Retention
Gene
ENSMUSG00000048787 | Dcun1d3
Description
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2679003]
Coordinates
chr7:126996677-127003429:-
Coord C1 exon
chr7:127002894-127003429
Coord A exon
chr7:127001571-127002893
Coord C2 exon
chr7:126996677-127001570
Length
1323 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
CCTTTTCCTACCTGTCACAGGAA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTTGCCTGGCTCCTCTAACTGATGGCATGTTGAAGTACATGGGCCAGTGGCAGCGAGGGCATTTGATCCAGAGGGGTCCACTCTAGAGGCCAGGGTACTACCACCATGGGCCAGTGTGTCACCAAGTGCAAGAATCCTTCATCAACCTTGGGCAGCAAGAATGGAGACCGGGACCCCAGCAACAAGTCACACAGCAGGCGGGGGGCTAGCCACCGTGAGGAACAGGTGCCACCTTGTGGCAAACCAGCTGGGGATATTCTTGTCAATGGGACCAAGAAAGCAGAGGCTGCCACTGAGGCCTGCCAGCTGCCAACTTCTTCTGGAGATGCTGGGAGGGAGTCCAAGACCAATGCTGAGGAGTCTTCTTTGCAGAGGTTGGAAGAACTATTCAGGCGCTACAAGGATGAGCGGGAGGATGCAATTTTGGAGGAAGGCATGGAGCGCTTTTGCAATGACCTATGTGTTGATCCTACAGAATTTCGAGTGCTGCTCTTGGCCTGGAAGTTCCAGGCTGCTACCATGTGCAAATTCACCAG
Seq A exon
GTTAGTCACAGATGCTTTCATGTCACCAGGGGAGCAGAGGAGGAAAGTGTGACACTGGATAGTGGTACCAACTAGGATAGAACTGGGATGGCTTCAGTTATCAAGTAGCAGTTGCATAATTTGTCAAAGTTATGTATCCATATTGGGGTTGTTTGTTTGTGTATAAGAATATGTCAGGGTCATGGAAGACCATGGTTTTAAGAGTGCAGGGTTATGAATAAGAACTGACTTTATTTTATTTTTTTAAGACAAGGTCTCACTATATAGCCCTAGTGGCCAGGAACTGGATATGTAGAACAAGGTGGCCTCAGACTTCAGGTTCTGCCTCCCTGCCTCTTGAGTGCTGGGATTAAAGGAGTGAATGACTATACCTGGCCTGGCAGAAGGAACTTTAAAACACAGCTAATATATATGACCTGCTCAGTAGAGTAGTTGCCTCACCACCACAGTCCCTGAGATAATTAGTATGAAACTCTGTTACAAACTGCAAAGTGCTGAATACATGTTAAAAAGCACATATGCAGCTGGATGTGGTGATACCTGTCTGTAATCCCAACCCCCAGGAGGCTGAGACATAGGGGTAGAAAATTCAAGGTTAGTATGAGCTACATAGTGAGGTCCTATCTTATAAAACAACAGAAACAAACAAAAACAGTAAAAAAAAATTTTTTACTACAGTTTTGGTAGTAGTATGTAATATGTTAATGTGCATGTATACGTGCATATGTGTCATGCTTTAAATGTGAAGGGGCCAGAAGACAACTTGAGGGATTTGGCTTTCTTTACCATGTATGCTCTTGAGATCAAAATTAGGTTATCATTCTTGGTGGCAAGTATATTTACCTGCTGAGCCATCTTGCCATGCCCCAGAAGGCACAGTTATTGTTGTTGGGTTTTTTCTCCATTTTATTTTATTTTATTTTATTTTATTTTATTTTATGTATATAGGTGTCTTGCCCACATTGTATATTTCTTAGGTGCATGCCTGGTATCCTCAGAGGCAAAATAAAAGTGTGTTAAACCCCTGGAACTGGATTTATAGGCTGCTATGAGTTGCCATGTAGGTTGGGAGAATTAAACTGGGCCCTATCTATCTAGCCACCCATCTAACCACCCACCCACCCATCTATTCTCGAGGCAAGGTCTGACTCTACAGCCTTAGCTGACCTTAGTAGACAAGGCTGGCCTAGAACTCGAGATCCTGTCTCTGCCTTCTGAGGGCTGCAGGTTGGGAGGATTAGTTGCTGTTAACTGTGCTGTCTTGCCTCATCATATACTAAATCACTTTTACTTATTAATCATACCTTTTCCTACCTGTCACAG
Seq C2 exon
GAAGGAGTTTTTTGATGGCTGTAAAGCAATAAGTGCAGACAGCATTGATGGGATCTGTGCACGGTTCCCTAGCCTCTTAACAGAAGCCAAACAAGAAGATAAATTCAAGGATCTCTACCGGTTTACATTTCAGTTTGGCCTGGACTCTGAAGAAGGGCAGCGGTCACTGCATCGTGAAATAGCCATTGCCCTATGGAAACTAGTATTTACACAGAACAATCCTCCAGTATTGGACCAGTGGCTAAATTTCCTAACAGAGAACCCTTCGGGAATCAAGGGCATCTCCCGGGACACTTGGAACATGTTTCTTAACTTCACTCAGGTGATTGGCCCCGACCTCAGCAACTACAGTGAAGATGAGGCCTGGCCGAGTCTCTTTGATACCTTTGTGGAGTGGGAAATGGAGAGAAGGAAAAGAGAAGTGGAAGGGAGAGGTACACTCAGCTCAGGGCAAGAGGGCTTGTGTCCAGAAGAGCAGACTTAGCCGCTCTGTTCCAGGAGCAGCACTGAGGATCTGCCTGCTGCCCTGCAGCCAAATGAGGAATTGGACCTTTCTGGAAATTACTGAAGATCCGGATATTTTCTACTTTACACCTTTCTCTGCCTTGTATTTGAAAGGGCTCTAAAATGCTGTATCATGTTTTAGGCACTTTCTTCATTTTTTTTTTTTTTTGTTATTTTGGTTATTTCTTTTTTGGGGGTGGGAAATCCCCCAAAATATTTGAACCTGGCTACATGTTGTGTACCTTTTTTTGAAGCCTTCAGATAGAATAAGCCTGCCATTTCTTGCACAACTTGATAGGATTTGTTTTGTGGGGGAGGGGAGGGTGTAGCCCGGGTTGGGAGTGGGTTGTTAGGTTGAATTAACATTACAAAATGATGCAGTGCCAGACCTCAGTTTTGCATATTATTTTTCAGGGCAGGTCTGTACTGTGTGTAGTGCTGTTTACATGGTTGAATTTAGGTTGTAATAATTATTTTAAAAGATTTACACAGATATGAATATAGCAGTGTTAACTGTTAGCCACATTGCATTAATTTCCAGACAGTTTGGAGCTCTTGGAGAGCCAAGGCCAAGGCCAGTCAAGAGCATTTGCAGTCTGACACCCCACCCCGTCCCTTTAAGCTAATTTATCCAAAGCCCTGTCTCCCTCACTTCTTGCTCATTCCTTCTTTGACCTATTGCATTTCATATTTAACTTACCCATCATCATGCTGTACCTGTCAGTCAAGTGAGCAGTTTTGTTTTGTTTTGTTAGAACACATTGTACTGAAAACCACTTAAGCATTGAATGCAGAGAAAGCAGTGCTACCTCAGTTTTGCTGGAAGTAGACTTCTTTGATAGTTTTCTTTGATGTTTTTGTATTTTCATGTCATAAGTGGAAATACTTCTTTTTCTCCCCTTTTCATTTGCCTTGGAGCCAAAGTTTCCGTTCTGGGTGGTGAGAAAAGTGTGCCTGCCAGCCGACCTGAAAGAAAGCGGTGGCATGGAGCTCTGCTTCAAACTGTTTTTTCTCTAGTTTTGTTGAGTATCATTAGCTTACTTGTCTGGCAAGTGCAGAAGCCTGAGGCTGGCCTGAACTCTGCCAAACAAATTATCCACGTGTATTGAATCATTAAATTGTGTGCCCTCTCCCTCTTTGCTGCGCCCACGTTGTCACTTAACCCCTAGGAATTATTTATTGTCTTTTTGTTAATGTCAAGCTCGGTTGGGGTAACGTGGTGACTGTTTAGGTTTACATGACCCTCTTCTCTTTCCCTTACCCCAGACATGTATATATACATATATAAGATATGTATATATTTTACCTTTATAAAATATATATATATACACATATATGTATCTATATCCCTTTGTTTGTCTGCTAAAACTGGCCATGAAAGAGGGAGCTGCCTTCAATCTGTAGTTTAAGAAGATGCCAGGGAGCATCATAAACGGAGGCTATTGTATATTAATTTAGACTTTTTCACTAAAAAGAACATGAATGAATTTGCTTGCCGAAGGAGGAACCAGTTCTCTAGACTCCATGCTCACTCTACAAGGCCAGCTTTGGTCAAGCTGCCACTGGGGCCTGAAGAGCTGACTCTGTCCTACCTTATTCCACTAAAGTACCATCTTGATAATTTCCCCTTAAAAAATATTCTCAAAAATGTACTGGAAAGTGGGTGGCAGGAGCTTGTACAGTTCAGCTTCCAACATTTCGGAACAGATTTAAAAGGGAATCTTTTAATAAATAAAAGTTACAAAAATATTTATACTCTTGATACAATGAAAAAGTGTCTATTAAATATTTGGAATTTCCTCCCTTGATTAGTCTACCCCAAATCCTGGGTACATGTTTCTCAACCTGGGTAAGAATTGCATGCTTTGAGTTCTTCATGAGTCTTATAGCTCTAGGCACTTATCTTTATAAAAATGATTATTTAAGGAGATGACAGTCATATTTCTTAAAGTCGGTATTGACACAGGGAACATTTTTGTAAGCCTCACAATTGTCCTTCCTTGAGGGATGAGATGATGAATATCAGCCACAGACTTACGATAGTGCTGGAAGGCCCAAGTGGCTGTTGGGCCAGATGTACCCCTTTTTTTTCTAGCCAGAATAAGATGAAATCCTTGAGTAAGAATCCAGGAGCCCAGTAGTTTCTGAGGGCACAGCTACATTATAACATTTGGTTAAGATCTCATCTAGCCAGTTAGTTGTTCCTAATTCAGGATTAGGTAGAAATCTAATGAGGGAAGAGGTGGAGTTAGGTAAGACTTTCTGTCCCAGATAAGAAAGGGTGTATGTGGGGAAAGTGCCAAGAGGGAGTTTGCCAAGGGCCCCATGGACTCAAGGAACTAGATCTTTTCCTCATTGGGTAGAGGTTTTTTTAACTGCTCAGTTTCTCCAATCCCAATGCCTGCACCCCAACCCCAGCCATTTAGAAATTGTGATTATATTTTTAATCATCTGTTGTTGAGAAACCAGAGAAAGGAACAGTATTCAGGGAGGGACTTTGGGTTTTCTGTGTAGTTGCTTTGCTTTGCCAAGAGATTCTCAGTGAGGTGTAAGGTTTGCAGTTAACACTTCTGGGAAACAAAAGTTTCTGTTTCACTCACCCTCAGATAGGCTTGCTGCTTATTGGGTGGATGAGCAGTGGCTGGGAGCCAAATTGCTCCTCAGGTTAGCTAGCTTTGTGGCTTCAGGTGATTTGGGAAGGGGTGATATCAGGGTGCCATTTTGGAATTCTGCAATGTCTAAGCATTACTACACAGACCGTTGGAAATTGCATACTTTGGGCAAATGACTTTTTGAGTTTCCATGGTAATTCTTTAGTAACTTATTAGCAAGCTGATATGAGATAAAAAGTTACTTTATTGAATTCTTTCCCTTAGTCTTCCTTGCCAAACTTGAATGTATCATTCTCATTGACGCTTTGCTGTACTTCTGGGGGTTGCTTCAGCAGCTCTCTCTTCATTGTGGCAGATGCGCCAACATGTCTGTTGGGTCCAGAAGTCTGTATGTACCTATCTGATAAAGAAGTTCTCAGAGCTGACTGAAAATCCAAATTTCAGCCAACACTTTGGGCCAAGGGAAAGATAACAGAAAATGTGCAAAGCAGTACTGTTCATATTAGAAGGGCAGTGAAGAATTACCATGCACACAGAATTAGCTTGAAACAGTACTGTCTCCTAGGGTGTGGTCTCCAGGCCAGATCAGGTTATGGGATCCCATAGATTATGTACGTAGACTGCACATTGGTGGGAAGTTGCTAAGATAAAGACTTGTCCAAAAACTAACAAAGCAAAAGATGTGTTTATTGGAATGTATAGTCTGCTGTATTTCAAGTGGGGTCTTCAGTGCAGCAGGTAGACCTAGTTATACAGTTATGTAAGGGATAGAGAACTACTGTTAAAAGGTTTTTATCCCCTCTCACCACTTAATCTCCTATGTATGTTAGGATGGCTAGTGATGACCTGAACATCTTGGTAACAGACAGAGGTCTTACCTGGAGGACTAAAGCAGTACTTAGCTTAAATACTTGAAAGGACAAAGTTATCAAAATACGTTGATTAGGATTATTTAAGGTCATGTGACACTGATCTTTTCTTCTGGGTCACGTAGAGGATAGGTTCTTGCCACACTCTTATTCAGAGTTTCCTTGGTAAGCTGTAATTGCAGCCCATACCAGTTTGACCTGGCCCAGGACTACATGCTGGGGATGCTCACCAGGAGTCGCCCCTGGTCTCAGCCCCTCTCCTCTTTATTTCAGAGAAGGATGCTTGAGCATTGGGCACAGATGCTGAGGTGGTTTGATTAGCTGAAAAACCAAGTTCTGATTCAGGTGTTGGGGCATCATGTTCTGTTTCTCTTGGAAACCCAGCCTGCTCTCATAGATACCTACTTCCATCACATATCCTGAGCATTGCCAAAAGAAGCCATTTAGCAGCTGCTGTTTTTCTCTCAGCACAAATATATTTGCTACAGAAGAATTCTCTTTTCTCTGGTCCTGGTCCCCAGACCTCAGAATCTGTTAACTGCTCTTCCCTGCTGCACTGAATATGGTTCTAGGTTTTGAAGAGGGAATTTGAAGCAATAGGCAATCAGGGCTTGGTTGAATTGGTCTTGCATATATCCTGTCTTAATCCTCTGAGGTGATGAGACACTGCTCATGTGACCTTCTACCTTTGTGGATCCCTCTTGGTTTGTGACCTTCGTACCTTCCCTGAGGTTGTACAAACTTGACAAAAGTTAATACTTTTGTATTCTCTGCACTGTTGCACTCTTCAAATAGCCCCCTGAATATTAACTTGATATACACATCTTTCTCTTTTATGTCTACAGTATTTTTTCCTTTTTTTTTTTTGAAGGTTATCTGCTGTTGAATTCAATAAATTTGTTTACCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048787-Dcun1d3:NM_173408:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.502 A=NA C2=0.121
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0355610=Cullin_binding=WD(100=74.1)
Main Inclusion Isoform:
NA

Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTCCAAGACCAATGCTG
R:
TCAGAGTCCAGGCCAAACTGA
Band lengths:
352-1675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: