GgaINT1011060 @ galGal4
Intron Retention
Gene
ENSGALG00000002267 | DCUN1D3
Description
DCN1, defective in cullin neddylation 1, domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28734]
Coordinates
chr14:14949849-14952720:-
Coord C1 exon
chr14:14952188-14952720
Coord A exon
chr14:14950333-14952187
Coord C2 exon
chr14:14949849-14950332
Length
1855 bp
Sequences
Splice sites
5' ss Seq
AAGGTTAGT
5' ss Score
8.54
3' ss Seq
TTTTTTCTCTCACTTAATAGGAA
3' ss Score
10.93
Exon sequences
Seq C1 exon
GTTGGCAGATGGCCGCTAGTGGCATGGTGCAATGTGCTGAGGGGCGGCCGCGGGGCTGTGGCACGGCGAGGAGGCTGCTCTGAATGAAGCCGGGCTCCCTGCACCATGGGCCAGTGTGTCACCAAGTGCAAGAATCCTTCGTCTACCCTCGGTAGCAAAAACGGGGAAAGGGAGACGGGCAGCAAATCGCATAGCAAGAGAAGTGCCCACAAAGATGACCATGCTTCAGCATGTGGGAAGTCCTCGGGAGATATACTTGTGAATGGGACAAAAAAAGCGGATGCTGCTGTGGAGTCCGGTCTGCCTTCAGCATTTTCTGGGGATACAAAGAAAGACTCTGTCTCCAGCACGGAAGAATCGTCCCTCCAAAGGATTGGAGAGTTATTTAGGAGATACAAGGATGAACGGGAAGATGCCATATTAGAGGAAGGAATGGAACGATTTTGCAATGACCTCTGTGTTGATCCCACTGAATTTAAAGTGCTAGTTCTGGCTTGGAAATTCCAGGCTGCTACTATGTGCAAATTTACAAG
Seq A exon
GTTAGTTCCCGCAAAGTTTTAATTATTTTCGTATGTTAAACTGTATCCTATCATCTGTATTGGAGAGATAGCCTCTTCATGTAGGTATTTCTTCTAACAGTTGCTCTTTGGTGCAGTTCACTCCTGCGGCTGCAGAAGGTAAACTTTGTGTTGTCCTCTCCTCCTGCTCCCTCATAGTAGATTTCAGAACTGAAGACGTTTCTGGGCATCACGCTACTAATGGTGAACAACATGGAGATGTTCTGTAGACATCAGTTTGTTCTTGATCCACAAATCCAGTTTTTCTGTATCAGCACTGTCTTAAGGTTAAGATTTGACACAGCAAATAACTTCTGCTTTAAAATAACGTGAGAGTCCTTACTTAGTATTGCTGCCAACTCTGTTATTTTTCTGTGAAAGAGCGTAAAGCAGAACTGTTCATGCCCAACTTATGTTACACATAATGTCTTTCTCCAAGACTAGTCCTGCTAAAGCTTAGAGAGGTGCTTCTGTAGTGACTGGTGTTGCAGGCTCTGCCTGTCCTGACAAGGCTGTCAGTTAGTGAACCCATAGCATTTCCAATGCTGCAGGAAATGACAGAATGGCTGAAAATCACCAGAAACCTACCCAGTCCCACCACCAAAAATCCCCAAACCAAAACACCCTCCCCACACACACACTGAGTTCTCTATCAGTGTCCAGGTAAGAGCAAGTAAAGAACTTTTATTGGAGTTTATGGTCAGTTGAGATTGATTTGAGTAATTTTAACTATTTTTACTCAGCTAATAACATTTAAAATTACTTTGGTGTTCTGAGCCTTAAGCCAAGCCTCTGCTGTGCACTGAACACTGATAGCTTCCCCTGCCTCTGCAGCGGCTGTGTGGTTGTGGGGGTGTGCTGAATGCAAATGTGGATTTTCCAGGGGCTGAAGCAGCAGGGCTGCACAGGGAAAAGGAATTGTCAGTGTCTGATTCTGCACAATCATTTTAATAACAATTTGATTTTCTGGGAGAGGTGCATTTCCAGTGGTGAGAGGTTACTTCTGCTCAGCAGCGTGTTCCATGATAGGGTCACAGACAGGTGGCTTTGGCCAAAGAAGGCAAGGCAGTCTTCTGATCTCCTGAGCTCTGCGCTCTTCTGTCTTCCCTCCACCCAATCCCACATCAGTCTGTGGTCATGGTTGACACCAACTGGTTGCTATACTGCAACACCTGCTCCTGAGTATGAAAGAAATCACAGTTAGCCACCTGTCCTTGTGGCAGGTCGTTGGTGTACTGCCTGGTGCCCTACTTTGAGCAGTGTCTGTGTGTTGCATTGTAGCCTGTGCCATGTGGTGTGGGTCTCTCTGCTTATACCCTCGCTGACCATCGCAGCTGGCACCCCCTCTGCCTTTCAGTCTGGAAAAGCAGCCATAAATTGAAGGAAGGCCACTGCTCAATGACTCTTCCTTGTGAGCAGCTTGTCCAGAGCATGGGCCCTCAGGCACGGGCAGCATCACATGGACCTGTTCTGTATGTGGTGCCATGGAGCAGCTGTGGTATTTTCCAGTGTGTTCAGCACTTCTCCTGTGGCTGATGTGGTTTACTCCGTGTTGGTGAAAGGCTCGGGCTGTGGGAGTACTACATATTCGGGAGGCCATATTACAGAGCTCTTCAGGTGATTGCAGTGCCCCGGCTGGGCTGGTGTGTGTGCTGCGGGTGGGCCAGGAGGGGCCTGAGGCAACATCTGTCCTTGCAGCGACTGCTGTTACCCAGAGCGTGGGGCTGGGGGCACCCACATGCTGCTGAGATCGCTCACTCTGACCTACTGAGGGGAGATGGGAAGTGCTTGGTGCATGAGAAGTGTTCACGCTAATTTTTTTTCTCTCACTTAATAG
Seq C2 exon
GAAGGAGTTTTTTGAAGGCTGTAAAGCAATAAACGCGGACAGCATCGATGGCATTTGTGCACGGTTCCCTGGCCTCTTACACGAAGCCAAGCAAGAAGATAAATTCAAGGATCTCTACCGCTTCACCTTTCAGTTCGGCCTGGACTCTGAGGAAGGACAGAGGTCGCTGCATCGGGAAATAGCCATTGCCCTTTGGAAATTAGTCTTCACCCAAAACAAACCCCCCATTTTGGACCAGTGGTTGCACTTCCTAGTTGAGAACCCCTCAGGAATCAAGGGAATTTCCCGGGACACATGGAACATGTTTCTAAATTTTACTCAGGTGATCGGACCAGACCTTAGCAACTACAGCGAAGACGAGGCCTGGCCGAGTCTCTTCGATACGTTTGTGGAGTGGGAAATGGAGAGGAGGAAAAAGGAAGAGGAAACCAAATGTATTACATCTTTGGACACAGAGGGTCTGTGTACAGAAGAACAGACTTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002267:ENSGALT00000003559:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.301 A=NA C2=0.041
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0355610=Cullin_binding=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGTCTCCAGCACGGAAGAA
R:
GAGTCCAGGCCGAACTGAAAG
Band lengths:
344-2199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]