HsaINT0045723 @ hg19
Intron Retention
Gene
ENSG00000188215 | DCUN1D3
Description
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) [Source:HGNC Symbol;Acc:28734]
Coordinates
chr16:20869396-20873965:-
Coord C1 exon
chr16:20873430-20873965
Coord A exon
chr16:20871692-20873429
Coord C2 exon
chr16:20869396-20871691
Length
1738 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
CCTTTTCCTTTCTGTTGCAGGAA
3' ss Score
13.24
Exon sequences
Seq C1 exon
GTTGGCTGGCTCCTCTGGCTGATGGCATGTTGAGGTACATGGGCCAGCGGCAGCGAGGGCATCCAATCCAGAGGGGTCCACTCTAGAGGCCAGGCCACCAGCACCATGGGCCAGTGTGTCACCAAGTGTAAGAATCCCTCATCGACCCTGGGCAGCAAAAATGGAGACCGTGAGCCCAGCAACAAGTCACATAGCAGGAGGGGTGCAGGCCACCGTGAGGAGCAGGTACCACCCTGTGGCAAGCCAGGTGGAGATATCCTCGTCAACGGGACCAAGAAGGCCGAGGCTGCCACTGAGGCCTGCCAGCTGCCAACGTCCTCGGGAGATGCTGGGAGGGAGTCCAAGTCCAATGCCGAGGAGTCTTCCTTGCAAAGATTGGAAGAACTGTTCAGGCGCTACAAGGATGAGCGGGAAGATGCAATTTTGGAGGAAGGCATGGAGCGCTTTTGCAATGACCTGTGTGTTGACCCCACAGAATTTCGAGTGCTGCTCTTGGCTTGGAAGTTCCAGGCTGCAACCATGTGCAAATTCACCAG
Seq A exon
GTTAGTCACAAACACTTTATGTCACCAGGTGAGCAGTGGAGGAAAGGGAACAGCATTGGGCAGTGGTGCCCAGCTAGGATAGGACTGGGTTGGCTTCATAGGGTTTTGGGTAAGTTTTTATTTTTCTGATCAGGTTCTCTAAAGCTTGAATCTTTTGAGCCAAGTTGTGGTTATGATGCTGAGAAGCCCCTCTGGACTCTAAGGGTTTAAAATATATCTCTCTGGCTCTGCAGCAGACCTACTGAATAGGAATCTCAGCAGGGAAGGCCCAGGCACTTGGATTTTGATAGAGATTCATGTCTGGTTCTAATGTGTACGCTATGGTTTTTTTTTTCTTTTTCTTTTTCTTTTTTTTTTTGCAGAATAACGCCTTTGCCTAATTCATAGGTCAAATTTCAGGCCTATCATAGCATTATTTGGCAGCTTCTGAGTAACTGGGCACTGCTCATCTTTGCCTTAAATGAGAAATAAGCCAGGGTGAGCCAGGTGGCCAAGTTGCTGCTCGGCCCCACTGCTGTCTTGGACCTTTCTTTTCTTTTACTCCTTTACATGTCAGTTCACTCACTTGATATTTATTGTATGCCCAGCATGTGCCAGGCACTGTGAGTACCAATATAGTAAGTGCCTCTGGGGAGGGGATACACCTCTCTCCCTCCATGAAGCCACTTGCACTGTGAGTACCAATATGGTAAGTGCCTCTGGGGAGGGGATACGCCTCTCTCCCTCCATGAAGCCACTTGCACTGTGAGTACCAATATGGTAAGTGCCTCTGGGGAGGGGATACGCCTCTCTCCCTCCATGAAGCCACTTGCACTGTGAGTACCAATATAGTAAGTGCCTCTGGGGAGGGGATACGCCTCTCTCCCTCCATGAAGCCACTTGCCCTTTCTGGTACTTAGCATGTTGCCCGCCCTCAGCCAGGCCTGTGTATAATAAGGTCAGTTGGCCTCAGTTACTAAGCAGTAGCTGTGCATATTGTTCTGGTCATATGTCCCTGTAGAATGTGGTTTGTAGAGCACGGGGTTGTGAATAAGAACTGACTGTGAGGCCTAGCCATACAATTTGTAGTTTGCATGCCCCCCACCCCAGGAAGGTTACCCTCCAGACCTCAGAGGCCTCACCTCTTCAGCAGATACTACAGTCCCTGAGAAGACGATCAATGCGAGACCATGCTGTAAGCTGAAAGGGTTGTATAGATGTTAAAAATACATACATAATTTTTGTTTTTTAATAATAGAATTTTGATCTCTGGTGGTAGAATTACTCAGGTTCAGAATCCTTGGCTCCAGAAGTCTCCCTTGGCAATCTCTAAAAATATACCCCAAACAAACAACCCATAGAGAATCAGAAGGGAAACAGGAAGCCTCCTCCTCTGGAAGGAGAAAGAATCCGCAGCTTAATCGCTATTGCAGAGCGGGAAACAGGGCAGGGAGCAGGAGACTTGAGTTTAGCTTTGGGAAGATGAATGAATGAATAAATGAACCATTATCAGCTGCCAACCGTGTGCCAGGCACTGTTAGAAGCAGAATAGTAATTTGTTTAGTCCTCACCAAAACCCTATGAAGTAAGGTGGTATTTTTACCATTTGACAAGTAAGGAAATAGGACTAATTAGTTGGAGGAGTTAGAATTCAAATTCAGACCATCTGGCCTGAAAGCCTTGCTCTTAATCACTATGTATATTGCCTGTAAATAGTATAGTTTATAATGATTAATTGTCCTTTTCCTTTCTGTTGCAG
Seq C2 exon
GAAGGAGTTTTTTGATGGCTGCAAAGCAATAAGTGCAGACAGCATTGACGGAATCTGTGCACGGTTCCCTAGCCTCTTAACAGAAGCCAAACAAGAGGATAAATTCAAGGATCTCTACCGGTTTACATTTCAGTTTGGCCTGGACTCTGAAGAAGGGCAGCGGTCACTGCATCGGGAAATAGCCATTGCCCTGTGGAAACTAGTCTTTACCCAGAACAATCCTCCGGTATTGGACCAATGGCTAAACTTCCTAACAGAGAACCCCTCGGGGATCAAGGGCATCTCCCGGGACACTTGGAACATGTTCCTTAACTTCACTCAGGTGATTGGCCCTGACCTCAGCAACTACAGTGAAGATGAGGCCTGGCCAAGTCTCTTTGACACCTTTGTGGAGTGGGAAATGGAGCGAAGGAAAAGAGAAGGGGAAGGGAGAGGTGCACTCAGCTCAGGGCCTGAGGGCTTGTGTCCCGAGGAGCAGACTTAGTGGCTCTGTCCCAGGAGCAGCAGCAAGGATCTGCCAGCTGCCCTGCAGCCAACTGAGGAATTGGACCATTTTGGAAATTACTGAAGATCCGGATATTTTCTACTTTACACCTTTCTCTGCCTTGTATCTGAAAGGGCTCTAAAATGCTGTATCATGTTTTAGGCACTTTCTTCATTTTTTTGGTTATTTTGGTTATTTCCTTTTTGGGGGGATCTCCCAGAATATTTGAACCTGGTTACATGTTGTGTATCTTTTTTTGAAGCCTTCAGATAGAATAAGCCTGCCATTTCTTGCACAAATTTAGGTTTTTTTTTTGTTTTTTTTTGTTTTTTTTTTTTTTTTTTTGGTAGGGGAGGGCATAGAGCAGGGCGGGGGGATGGGACTGTTAGGTTGAATTAACATTACAAAATGATACAGTGCCAGATCTCAGTTTCGCATATTGTTTTTCAGGGCAGGTCTGTACTGTGTGTAGTGCTGTTTACATAGATGAATTTAGGTTGTAATAATTATTTTTAAAGATTTACACAGATTTGAATAGCAGTGTTAACTGTTAACCACATTGCATTAATTCCCAGGCGATTTAGAGCTCTTGGAGAGCCAAGGCCAGCCAAGAGCATTTGTAGTCTGGTGACAACCCCCTTTTAAGCTAATTTATCCAGAACCCTGATTTCCCTCACTTCTTGCTCATTCCTTCTTTGACCTATTGCATTTCATGTTGAGTTTTTCCATCAACATGCTGCACCTGTCAGTCAAGTGAGCATTTTTTAAGAACACATTGTACTGAGAACCACTTAAGCATTGAATGCGGAGAAAGCAGTGCTACCTCAGTTTTGCTGGAAGTAGACTTCTTTGATAGTTTTCTTTCTTTGATGAAGTTTCTGTATTTTCATGTTGTAAGTGGAAATACTTTTTTTTGTTTGTTTGTTTCATTTGCCTTGGAGCCAAAGTTTCTGTTCCTGGTGGTCGGGAAACTGCCTGCCGGCCAACTGACTTGAAGGAAAACTGTGGTATGGAGCTCTGCTTGAATTTTTTTTTTTTTAATATTTTTATTTTTTTCTTTGAATATCATCAGCTTACTTGTCTGGCAAGGGCAGAAGCCTGGGGTTGGCCTGAACTCTGCCAAACAAATATCAAAGTGTATTTAATAGTTAAATTTGTGCCCTTTCCCTTCTTGCTGCACCCATGTTGTCACTTAACCCCCAGGAGTTATTTATTATCTTTTTGTTAAAGTCAGGCTCATTTGGGGTAATGTGATGACTGTTTAGGTTTACATGACCCTCCTCTCCTTTCCCTACCCCCAAATATGTATATATACATATATAAAATATGTATATATTTTACCTATATAAAATATATATATATACACATATATGTATCTATATTCCTTTGTTTCTTTGCCTGCTTATACTGGCCATAAAAGAGGGAGCTGCCTTCAATGTATAAAGTATAAGAAGAGTGCCAGGGAATGCCATAATGGAGGCTTTTGGATCTGAATTTGGACCATTTCACTAAAGAGAACATGAGTTTGCTCAGCCCTTTCCTCACAAGAGGGAGGGCCCCGGTTCCCCAGACTTCTCCACGCGCTGGCTCCATAAAGGCCAGCTTTGGCCAGGCTGCCACAGGGGCCTGAGGAGCTCACTCTGGGCCTACCTGGTTTCAGTTAGAGGGTCCTCCTGTTATTTTTCCATTTAAAAAGTATGTCCTCAGAAAACTGTACTGGAAGGATGGGTGGCAGGAACTTGTATAGTTCAGCTTCCAACACTTTGGAACAGATTAAAAAGGGAATCTTTTAAATAAAAACGTATAAAAATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000188215-DCUN1D3:NM_173475:2
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.507 A=NA C2=0.130
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0355610=Cullin_binding=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTCCAATGCCGAGGAGTC
R:
TCAGAGTCCAGGCCAAACTGA
Band lengths:
345-2083
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)