DreINT0008786 @ danRer10
Intron Retention
Gene
ENSDARG00000011493 | DCUN1D3
Description
DCN1, defective in cullin neddylation 1, domain containing 3 [Source:HGNC Symbol;Acc:HGNC:28734]
Coordinates
chr24:39641836-39647408:+
Coord C1 exon
chr24:39641836-39642371
Coord A exon
chr24:39642372-39645486
Coord C2 exon
chr24:39645487-39647408
Length
3115 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
GTATTTCCTCTCTGTGTCAGGAG
3' ss Score
7.22
Exon sequences
Seq C1 exon
GGCATGGTGACTGCTGTCCGTCAGCCAGAGCAGAGGCGTCACGCAGGGGCCGTCTGGACCTGAAGGAAGACCTCCGAAACAGGACGAGTTTAAAACGACAGCGAGAGAGACATGGGGCAGTGTGTGACTAAATGTAAAAACCCCACGTCCTCTCTGGGTAGTAAAAGTGGAGACAAGGATGGCAAGTCTCATGGGAAGAAAGGCGGCGGCGGGACGCACAAGGAGGAGGTTGCCAAATCCTCTGCCGAGGTCATAATTAATGGCACCAAAGTGTCGGAGGGGACGGTGGAGGGCCCTGTGGCTCCGGTCATCTCAGCGGTGGATGTGCGGCGTGATCAGTCTGCACAGGACGGCGACGGAGTCTCCATCGATCGGATACATAAGATGTTCTTGTGTTATAAGGACGAACATGAAGACTCTATTCTGGAGGAGGGCATGGAGCGCTTCTGCAATGACCTCTGCGTCGATCCGGCTGAGTTCAAAGTTCTGGTGCTGGCGTGGAAATTCCAGGCTGCTACCATGTGCAAGTTTACAAG
Seq A exon
GTGAGTTTTAAGTGTGACTTTATATAAACTATGGAACCCTTTCACATTTCTGAGTTTCTGAGCAGTGTCATAGTTGGTAGACTCAGAGTGCAGTGAATGGGAAAGTACAACTAATCCTACAATCCTATTGGCTGAAATAATAAAAGAAAACTACACGATGACGCTATCAAGGCTTTCAGAAAAAGGACAAAAATAGTATACGATACCGGCAGCCAGAAGAGAGAATAATGTCAAATTAAAGCCTGGTTTATACTTCTGCGTCAAGTGATCGACATGACCCATGGCTCCTACCTTGCGTGTAGTCGTGCATTTATACTTCTGGGCGCTGTTTGTGTTGCTCTGCAATAACACTTCCGAATCGCTAGCTGTTTATGTTCCTCTGTGTCGAGTTTCTTCATGGGTGTTTTGTTTTTTTTGAATGCTATCTTAGTGTACAAGTAGCTAAAACTCGCTCATTCTGAGGCGGGAAGTGGCAGATGTGCAACAACTGTTTTGGGGATTTTTAACGACCACAGAGAGTCAAGACTTCGGTTTAACGTCTCATCCGAAAGACGGCGCTCACTGAGCAGTATAGAGTCCTCGTCACTATACTGGGGCATTAGGACCCACACAGACAGCAGGTTGGGCGCCCCCTGCTGGCCTCACTAACACCACTTCCGGCAGCAACCTAGCTTTCCCATGTGGTCTCCCATTCAGGTACTGACCGGGCGCAGCCCTGCTTAGCTTCAGTGGGCGACCATGTGAGAGTTGCAGAGATCTAGCTGCCGGCAGTTGCATTTATCCACACTTGTAGATTGTTTGTTATATTTTATGCAGATGCACTCGTCCTAGTTAATCTACGATTATAAATTCTTTCCAAATAGAGAATAAGGAAATATCGCAATGCTAGATTTTTACAAGATTTTTACAAGATTTTTTTAGGGCATTTTTTTTAAATGCCCTAGTTAATGCATTTAAAAAAAATCTAAATATGAAAAAATTTCAAGGATTTAAAATGCTGATTAAACACATCATAACACGTCTTCATTCATTCATTTGTTTTCTTTTTGGCTTTAGTCCCTTTATTAATCCGGGGAATGTACCGCCAACTTATCCGGCACATTTTTACGCAGCAGATGCCTTTCCAGCCACAAACCATCCCTGGGAAACATTCACACACACTCATTCACACTCATACACTACGGACAATTTAGCCTACCCAATTCACCTGTACCGCATGTCTTTGGACTGTGGGGGAAACCAGAGCACCCGGAGGAAACCCACGCGAACGCAGTGAGAACATGCAAACTCCACACAGAAACGCTAACTGACCCAGTCAAGGCTCGAACCAGCGACCTTCTTGCTGTGAGGAGACAGCACTACCTACTGCGCCACTGCATCACCCATAAGAGTCATGTGAATGGAAAATTTGATGGAAAAAAGAGGAATCATTGCTGAAAAAGTGAGCAGATACTAATGAGCTGTGTTGCGGCAGAGTCCTCCAGCACAGCATTATGGGTGTTTAAGGGTCTGAGGCAATCCTGGAAAATACAGAAGTTGAGTTGGAGTCATAAAAAGAGCTGTTGTGAGTGTTTGATTGCAGACGTTACAGTGTGGTGAGAGATCATTACTCACTGCAGTTCCTTCACCAACACTCAAACCTCCAAACATTGCTTCATCGCGGCAAAGTGTTGCAATGTCCATATTTGTGTGGCTTTCAAATCTGCATTTAATTAAACACAGCCATATAATTTAGTCCATTTCAGTAGTTTATTAAAGTCATACAATTTTTCGATAATCTTTTGAATGTGTGAGAATACCGAAGAAATGATCTGTTGTTATTTCTGTTTGATCACAGTGTGGGTTCATGTTACATGAATGATTATGTTGGCTTGAGAAAGCCAACATACTGTTATGCTACTCTGTCCTTGAAAACAAACGTATCTCCTCCTAGGCCGTTCATGCCACAAGGCCCAAATGTGGTCAAAATGTGCCTTCTGCATTCAAGATTGTTGCTATATCTCCTCATGCCTATAAGACTTATTGTTTTTTTAATAAAAAATGTTCAATTTTAAATTTTTATAACCCGGATATATTTAAAAAATTATACAAGCCCCAAATTTGGCCAAAAGCTGTATTTAGATGCGTTAGATTTTGTTGCTATATCTTTAAGGTTTATCAGACTTATAGTTTTTCATTAAATAATTTTTAAGCATTGTTTTTCTCAAAATATGGCAAGCCATTTTTGACTTAAACTCCATATTTTTACTGATATGGCAAGCCATTTTTGCATGTATAACTTTCACACTTAAGCATTGTATTTTCAAAAATATACGGCAAGCCATTTTTACATAATGTTCATTCCCTTAGTCCCTTTATTAATCAGGGGGCGCCACAACGGAATGAACCGCCAACTTATCCAGCATTTGTTTTACACAGCGAATGCCCTTCCAGCTGCAACCCAACACCAGGACTACATAATGTTCAAGTCCAGTTTTTGACACTCATAAAGACTGTCATAGAAACATCGGGGTTGATTAAGATCACTCAGATTGTCAAGAAGCTTTGATGTATCATCACTAACCTGTCAAATGTCCCCATAGCAATAAAACAGTATAACCTAGCAACCATTTAAAAATAGCAATATCTCTACATCAGAACATCGTAGGGACCTGGGCATTGGCTTGTTTGACTCATGCTAGCAAATGGGACTTCCTGTGTACTATGCATGGTAACAATGATAATGGAAGCCAAATGCTAATAACGATTAGCTACATGCTATGAATGATTATCTAAATGCAATAACATATGCTAGAAATGCCTACTAAGTATTAGCATTTGATCAAACATGTACACGAGCATTGCCATTTAGCAACTGCTTAGCAACCACCTAACAATGCCAGAAACGTTTTAGCAACTGCCTAGCAACCACTTAGCAACCGTGCTTTCTGCCAACTGCCATTCCCAGTCCTAGCGCAGTCACGTTGCCTTTCTCAAGCCAACATCAAAGTTTATCAATGAACTTTAGGTTCTAGTTGTACTGTGTGATTGCACCTTATTTTTACCTCCTCACTGTTGATGGTTTCTATTGCAAATATTTTACAAATATCATACCAGTATTTCCTCTCTGTGTCAG
Seq C2 exon
GAGAGAGTTTGTGGACGGCTGCAAGGCGATCCAGGCTGACAGCATCCCGGGAATCTGCTCTCGTTTCTCCGTGCTGCTAGAGGAGTCCCGTGGAGAAGAGAGTTTCAAGGATCTGTATCGCTTCACCTTCCAGTTCGGTCTGGATGCAGAGCAGGGCCAGCGGTCTCTGCAGCGCTCCATCGCCATCGCTCTGTGGAGGCTGGTCTTCACGCTGGACACTCCGCCGGTGCTGGAGCGCTGGCTGGACTTCCTGTCGGAGAACCCGTGCGCCGTCCGCGGCATCTCTCGGGACACCTGGAACATGTTTCTGAACTTCACGCAGAGCATCGGCCAAGATCTCAGCAACTACAGTGAGGACGAGGCCTGGCCGAGCCTGTTTGACTCCTTTGTGGAGTGGGAGACGGAAAGACGGAGACGGGAACACACCGAAACAGACCCCAACGGAGACTGCGAAGCCTCGTCCATGTGACCAGGATGTTTGTATTTCATTTTGGGAGGATGACGGTGAGTTCTGGACTGATTTGTGACTCGTATTATTATTATTATTATTATTATTATGAATTTTGTTTTGTTTTTCTCCGGTCTTAACGCATTGGGCATCCCAGTGTGCTCTTGAACTTTGTTTTTTTTTAACGAAAGGGCTCCAATCGAATTGTTTTTTATTTTAGAAAGCACTTTTATTTAAGTTATTACTGTTTAAGTCGTTTTAAGTGACGTTTGCATTTCAACCAGAGCGGTTTCTTATCACTGATGTTAGTTTGGGATTCACTGACGCGCCAAAGAAAAGGGAATTCTGTCCGCTGCCTGCCGAGTTTGAGCACACACACACACACACACACACGCATATGCATTAGTGTTGTTATAATTTAAGAATTTTGGTACCAATCGGACGTTAATTTCCTGATGACGTTTAAGCTCCGTTGAGTGCGTTCAACACCGCTGATTGGCCATTGTGTTCATGTGCTCAACAGAAATGACTGTGATTGGCTGCGAAGCTCATCAGTTCACCACTGTTGACTGCTGTTGACCAATTATAAACAGAATATTGACACTGGAGCGTTTCATGAGCTGACATACAAGCGACGTGACTTTGAAACACTGCAGCTTCGTGTCTTTGTGTACGTTCAGTGAACAGTGGTGAACTGATGACCTTCACAGCCAATCACAGTCATTTCTGTTGAGCACTGGTGAACACAACAGCCAATCAGCTGTGTTTAAGAAAGGAAATTGACGTTTTTAGTGTTTCACTAGCGATTTGCACTGGGATTCCAGTATCGTGACAACACTCATATGCATATATATATTTGTTTATGCACAAAAAGAAACCCAGACTTAAGTAATGCCAGCAGACATGCTGTTTTTAACGGTTATATTTGGGGTTCTGGGTGTGAGGTGGTAATATTGGTTGTGTTTTACATCAGACTGCGGTGATTGATGTCTTGAAGCTCTCAAAACCTCATTTCTCATGTGCTTCCCTGCTCATTTCTGACTCGGTTTTGTTCGTTTTGGTTATTTTCATTCACAAAATTTCTGATTCCTTCAGTAATTCTGCTGTTCGCTCAGATATTCTCAACGGTCAGGTGTGCGTGTTTGTGTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGAAATACGGATTCATTTGCTGTTGGATGTCTGCTGTGAGCTGCTTCTTTTATTTTACAGTTTACATTAATATGTTTTTTTTTTTAATTCAAAGTGATTCATTTCAGTCTTTTGTGTCTGGTTTTATATAAATTATACAGTTTATAATGAATAAAAATGTGTTGAACATTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000011493:ENSDART00000132939:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.268 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0355610=Cullin_binding=WD(100=76.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]