MmuINT0047291 @ mm10
Intron Retention
Gene
ENSMUSG00000048787 | Dcun1d3
Description
DCN1, defective in cullin neddylation 1, domain containing 3 (S. cerevisiae) [Source:MGI Symbol;Acc:MGI:2679003]
Coordinates
chr7:119852796-119859915:-
Coord C1 exon
chr7:119859380-119859915
Coord A exon
chr7:119858057-119859379
Coord C2 exon
chr7:119852796-119858056
Length
1323 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGT
5' ss Score
8.02
3' ss Seq
CCTTTTCCTACCTGTCACAGGAA
3' ss Score
8.44
Exon sequences
Seq C1 exon
GTTGCCTGGCTCCTCTAACTGATGGCATGTTGAAGTACATGGGCCAGTGGCAGCGAGGGCATTTGATCCAGAGGGGTCCACTCTAGAGGCCAGGGTACTACCACCATGGGCCAGTGTGTCACCAAGTGCAAGAATCCTTCATCAACCTTGGGCAGCAAGAATGGAGACCGGGACCCCAGCAACAAGTCACACAGCAGGCGGGGGGCTAGCCACCGTGAGGAACAGGTGCCACCTTGTGGCAAACCAGCTGGGGATATTCTTGTCAATGGGACCAAGAAAGCAGAGGCTGCCACTGAGGCCTGCCAGCTGCCAACTTCTTCTGGAGATGCTGGGAGGGAGTCCAAGACCAATGCTGAGGAGTCTTCTTTGCAGAGGTTGGAAGAACTATTCAGGCGCTACAAGGATGAGCGGGAGGATGCAATTTTGGAGGAAGGCATGGAGCGCTTTTGCAATGACCTATGTGTTGATCCTACAGAATTTCGAGTGCTGCTCTTGGCCTGGAAGTTCCAGGCTGCTACCATGTGCAAATTCACCAG
Seq A exon
GTTAGTCACAGATGCTTTCATGTCACCAGGGGAGCAGAGGAGGAAAGTGTGACACTGGATAGTGGTACCAACTAGGATAGAACTGGGATGGCTTCAGTTATCAAGTAGCAGTTGCATAATTTGTCAAAGTTATGTATCCATATTGGGGTTGTTTGTTTGTGTATAAGAATATGTCAGGGTCATGGAAGACCATGGTTTTAAGAGTGCAGGGTTATGAATAAGAACTGACTTTATTTTATTTTTTTAAGACAAGGTCTCACTATATAGCCCTAGTGGCCAGGAACTGGATATGTAGAACAAGGTGGCCTCAGACTTCAGGTTCTGCCTCCCTGCCTCTTGAGTGCTGGGATTAAAGGAGTGAATGACTATACCTGGCCTGGCAGAAGGAACTTTAAAACACAGCTAATATATATGACCTGCTCAGTAGAGTAGTTGCCTCACCACCACAGTCCCTGAGATAATTAGTATGAAACTCTGTTACAAACTGCAAAGTGCTGAATACATGTTAAAAAGCACATATGCAGCTGGATGTGGTGATACCTGTCTGTAATCCCAACCCCCAGGAGGCTGAGACATAGGGGTAGAAAATTCAAGGTTAGTATGAGCTACATAGTGAGGTCCTATCTTATAAAACAACAGAAACAAACAAAAACAGTAAAAAAAAATTTTTTACTACAGTTTTGGTAGTAGTATGTAATATGTTAATGTGCATGTATACGTGCATATGTGTCATGCTTTAAATGTGAAGGGGCCAGAAGACAACTTGAGGGATTTGGCTTTCTTTACCATGTATGCTCTTGAGATCAAAATTAGGTTATCATTCTTGGTGGCAAGTATATTTACCTGCTGAGCCATCTTGCCATGCCCCAGAAGGCACAGTTATTGTTGTTGGGTTTTTTCTCCATTTTATTTTATTTTATTTTATTTTATTTTATTTTATGTATATAGGTGTCTTGCCCACATTGTATATTTCTTAGGTGCATGCCTGGTATCCTCAGAGGCAAAATAAAAGTGTGTTAAACCCCTGGAACTGGATTTATAGGCTGCTATGAGTTGCCATGTAGGTTGGGAGAATTAAACTGGGCCCTATCTATCTAGCCACCCATCTAACCACCCACCCACCCATCTATTCTCGAGGCAAGGTCTGACTCTACAGCCTTAGCTGACCTTAGTAGACAAGGCTGGCCTAGAACTCGAGATCCTGTCTCTGCCTTCTGAGGGCTGCAGGTTGGGAGGATTAGTTGCTGTTAACTGTGCTGTCTTGCCTCATCATATACTAAATCACTTTTACTTATTAATCATACCTTTTCCTACCTGTCACAG
Seq C2 exon
GAAGGAGTTTTTTGATGGCTGTAAAGCAATAAGTGCAGACAGCATTGATGGGATCTGTGCACGGTTCCCTAGCCTCTTAACAGAAGCCAAACAAGAAGATAAATTCAAGGATCTCTACCGGTTTACATTTCAGTTTGGCCTGGACTCTGAAGAAGGGCAGCGGTCACTGCATCGTGAAATAGCCATTGCCCTATGGAAACTAGTATTTACACAGAACAATCCTCCAGTATTGGACCAGTGGCTAAATTTCCTAACAGAGAACCCTTCGGGAATCAAGGGCATCTCCCGGGACACTTGGAACATGTTTCTTAACTTCACTCAGGTGATTGGCCCCGACCTCAGCAACTACAGTGAAGATGAGGCCTGGCCGAGTCTCTTTGATACCTTTGTGGAGTGGGAAATGGAGAGAAGGAAAAGAGAAGTGGAAGGGAGAGGTACACTCAGCTCAGGGCAAGAGGGCTTGTGTCCAGAAGAGCAGACTTAGCCGCTCTGTTCCAGGAGCAGCACTGAGGATCTGCCTGCTGCCCTGCAGCCAAATGAGGAATTGGACCTTTCTGGAAATTACTGAAGATCCGGATATTTTCTACTTTACACCTTTCTCTGCCTTGTATTTGAAAGGGCTCTAAAATGCTGTATCATGTTTTAGGCACTTTCTTCATTTTTTTTTTTTTTTGTTATTTTGGTTATTTCTTTTTTGGGGGTGGGAAATCCCCCAAAATATTTGAACCTGGCTACATGTTGTGTACCTTTTTTTGAAGCCTTCAGATAGAATAAGCCTGCCATTTCTTGCACAACTTGATAGGATTTGTTTTGTGGGGGAGGGGAGGGTGTAGCCCGGGTTGGGAGTGGGTTGTTAGGTTGAATTAACATTACAAAATGATGCAGTGCCAGACCTCAGTTTTGCATATTATTTTTCAGGGCAGGTCTGTACTGTGTGTAGTGCTGTTTACATGGTTGAATTTAGGTTGTAATAATTATTTTAAAAGATTTACACAGATATGAATATAGCAGTGTTAACTGTTAGCCACATTGCATTAATTTCCAGACAGTTTGGAGCTCTTGGAGAGCCAAGGCCAAGGCCAGTCAAGAGCATTTGCAGTCTGACACCCCACCCCGTCCCTTTAAGCTAATTTATCCAAAGCCCTGTCTCCCTCACTTCTTGCTCATTCCTTCTTTGACCTATTGCATTTCATATTTAACTTACCCATCATCATGCTGTACCTGTCAGTCAAGTGAGCAGTTTTGTTTTGTTTTGTTAGAACACATTGTACTGAAAACCACTTAAGCATTGAATGCAGAGAAAGCAGTGCTACCTCAGTTTTGCTGGAAGTAGACTTCTTTGATAGTTTTCTTTGATGTTTTTGTATTTTCATGTCATAAGTGGAAATACTTCTTTTTCTCCCCTTTTCATTTGCCTTGGAGCCAAAGTTTCCGTTCTGGGTGGTGAGAAAAGTGTGCCTGCCAGCCGACCTGAAAGAAAGCGGTGGCATGGAGCTCTGCTTCAAACTGTTTTTTCTCTAGTTTTGTTGAGTATCATTAGCTTACTTGTCTGGCAAGTGCAGAAGCCTGAGGCTGGCCTGAACTCTGCCAAACAAATTATCCACGTGTATTGAATCATTAAATTGTGTGCCCTCTCCCTCTTTGCTGCGCCCACGTTGTCACTTAACCCCTAGGAATTATTTATTGTCTTTTTGTTAATGTCAAGCTCGGTTGGGGTAACGTGGTGACTGTTTAGGTTTACATGACCCTCTTCTCTTTCCCTTACCCCAGACATGTATATATACATATATAAGATATGTATATATTTTACCTTTATAAAATATATATATATACACATATATGTATCTATATCCCTTTGTTTGTCTGCTAAAACTGGCCATGAAAGAGGGAGCTGCCTTCAATCTGTAGTTTAAGAAGATGCCAGGGAGCATCATAAACGGAGGCTATTGTATATTAATTTAGACTTTTTCACTAAAAAGAACATGAATGAATTTGCTTGCCGAAGGAGGAACCAGTTCTCTAGACTCCATGCTCACTCTACAAGGCCAGCTTTGGTCAAGCTGCCACTGGGGCCTGAAGAGCTGACTCTGTCCTACCTTATTCCACTAAAGTACCATCTTGATAATTTCCCCTTAAAAAATATTCTCAAAAATGTACTGGAAAGTGGGTGGCAGGAGCTTGTACAGTTCAGCTTCCAACATTTCGGAACAGATTTAAAAGGGAATCTTTTAATAAATAAAAGTTACAAAAATATTTATACTCTTGATACAATGAAAAAGTGTCTATTAAATATTTGGAATTTCCTCCCTTGATTAGTCTACCCCAAATCCTGGGTACATGTTTCTCAACCTGGGTAAGAATTGCATGCTTTGAGTTCTTCATGAGTCTTATAGCTCTAGGCACTTATCTTTATAAAAATGATTATTTAAGGAGATGACAGTCATATTTCTTAAAGTCGGTATTGACACAGGGAACATTTTTGTAAGCCTCACAATTGTCCTTCCTTGAGGGATGAGATGATGAATATCAGCCACAGACTTACGATAGTGCTGGAAGGCCCAAGTGGCTGTTGGGCCAGATGTACCCCTTTTTTTTCTAGCCAGAATAAGATGAAATCCTTGAGTAAGAATCCAGGAGCCCAGTAGTTTCTGAGGGCACAGCTACATTATAACATTTGGTTAAGATCTCATCTAGCCAGTTAGTTGTTCCTAATTCAGGATTAGGTAGAAATCTAATGAGGGAAGAGGTGGAGTTAGGTAAGACTTTCTGTCCCAGATAAGAAAGGGTGTATGTGGGGAAAGTGCCAAGAGGGAGTTTGCCAAGGGCCCCATGGACTCAAGGAACTAGATCTTTTCCTCATTGGGTAGAGGTTTTTTTAACTGCTCAGTTTCTCCAATCCCAATGCCTGCACCCCAACCCCAGCCATTTAGAAATTGTGATTATATTTTTAATCATCTGTTGTTGAGAAACCAGAGAAAGGAACAGTATTCAGGGAGGGACTTTGGGTTTTCTGTGTAGTTGCTTTGCTTTGCCAAGAGATTCTCAGTGAGGTGTAAGGTTTGCAGTTAACACTTCTGGGAAACAAAAGTTTCTGTTTCACTCACCCTCAGATAGGCTTGCTGCTTATTGGGTGGATGAGCAGTGGCTGGGAGCCAAATTGCTCCTCAGGTTAGCTAGCTTTGTGGCTTCAGGTGATTTGGGAAGGGGTGATATCAGGGTGCCATTTTGGAATTCTGCAATGTCTAAGCATTACTACACAGACCGTTGGAAATTGCATACTTTGGGCAAATGACTTTTTGAGTTTCCATGGTAATTCTTTAGTAACTTATTAGCAAGCTGATATGAGATAAAAAGTTACTTTATTGAATTCTTTCCCTTAGTCTTCCTTGCCAAACTTGAATGTATCATTCTCATTGACGCTTTGCTGTACTTCTGGGGGTTGCTTCAGCAGCTCTCTCTTCATTGTGGCAGATGCGCCAACATGTCTGTTGGGTCCAGAAGTCTGTATGTACCTATCTGATAAAGAAGTTCTCAGAGCTGACTGAAAATCCAAATTTCAGCCAACACTTTGGGCCAAGGGAAAGATAACAGAAAATGTGCAAAGCAGTACTGTTCATATTAGAAGGGCAGTGAAGAATTACCATGCACACAGAATTAGCTTGAAACAGTACTGTCTCCTAGGGTGTGGTCTCCAGGCCAGATCAGGTTATGGGATCCCATAGATTATGTACGTAGACTGCACATTGGTGGGAAGTTGCTAAGATAAAGACTTGTCCAAAAACTAACAAAGCAAAAGATGTGTTTATTGGAATGTATAGTCTGCTGTATTTCAAGTGGGGTCTTCAGTGCAGCAGGTAGACCTAGTTATACAGTTATGTAAGGGATAGAGAACTACTGTTAAAAGGTTTTTATCCCCTCTCACCACTTAATCTCCTATGTATGTTAGGATGGCTAGTGATGACCTGAACATCTTGGTAACAGACAGAGGTCTTACCTGGAGGACTAAAGCAGTACTTAGCTTAAATACTTGAAAGGACAAAGTTATCAAAATACGTTGATTAGGATTATTTAAGGTCATGTGACACTGATCTTTTCTTCTGGGTCACGTAGAGGATAGGTTCTTGCCACACTCTTATTCAGAGTTTCCTTGGTAAGCTGTAATTGCAGCCCATACCAGTTTGACCTGGCCCAGGACTACATGCTGGGGATGCTCACCAGGAGTCGCCCCTGGTCTCAGCCCCTCTCCTCTTTATTTCAGAGAAGGATGCTTGAGCATTGGGCACAGATGCTGAGGTGGTTTGATTAGCTGAAAAACCAAGTTCTGATTCAGGTGTTGGGGCATCATGTTCTGTTTCTCTTGGAAACCCAGCCTGCTCTCATAGATACCTACTTCCATCACATATCCTGAGCATTGCCAAAAGAAGCCATTTAGCAGCTGCTGTTTTTCTCTCAGCACAAATATATTTGCTACAGAAGAATTCTCTTTTCTCTGGTCCTGGTCCCCAGACCTCAGAATCTGTTAACTGCTCTTCCCTGCTGCACTGAATATGGTTCTAGGTTTTGAAGAGGGAATTTGAAGCAATAGGCAATCAGGGCTTGGTTGAATTGGTCTTGCATATATCCTGTCTTAATCCTCTGAGGTGATGAGACACTGCTCATGTGACCTTCTACCTTTGTGGATCCCTCTTGGTTTGTGACCTTCGTACCTTCCCTGAGGTTGTACAAACTTGACAAAAGTTAATACTTTTGTATTCTCTGCACTGTTGCACTCTTCAAATAGCCCCCTGAATATTAACTTGATATACACATCTTTCTCTTTTATGTCTACAGTATTTTTTCCTTTTTTTTTTTTGAAGGTTATCTGCTGTTGAATTCAATAAATTTGTTTACCTAATTATTGATATTTCTGCAGAAAACAAAAAACAGTGAATTTATTCTGAGGTAAAGTTTATCAACCCATTGGGAACCTTTTCCAATGTGATGCTATGCTATATTAACAACTTAGGAAAATGACCCATGTAGGATAGGAGTCTTCCTCCATGCACATGAATGCTTGCTTAGATGCCCATTACTGAAATCATCTTTCTTACCTTAGGTATCACAGTTCCCATGAGAAATAAAAAGACAGTTTTGAGCTCTATGTTAAATACATGGGTGGTCCCTAGGTCTAATTAGGCTTGCAATGATTAAGTTTATTTTTTAATTCATCTGCAAAATAAAGGGCATTGGTATTAGGATTTAAGAAAAAGTCTGTGAAACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000048787:ENSMUST00000059851:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.501 A=NA C2=0.123
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0355610=Cullin_binding=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTCCAAGACCAATGCTG
R:
TCAGAGTCCAGGCCAAACTGA
Band lengths:
352-1675
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types