RnoINT0045604 @ rn6
Intron Retention
Gene
ENSRNOG00000014037 | Dcun1d3
Description
defective in cullin neddylation 1 domain containing 3 [Source:RGD Symbol;Acc:1308893]
Coordinates
chr1:189627972-189630977:-
Coord C1 exon
chr1:189630441-189630977
Coord A exon
chr1:189628701-189630440
Coord C2 exon
chr1:189627972-189628700
Length
1740 bp
Sequences
Splice sites
5' ss Seq
CAGGTTGGT
5' ss Score
8.08
3' ss Seq
CCTTCTCCTACCTGTTGCAGGAA
3' ss Score
10.1
Exon sequences
Seq C1 exon
GTTGGCTGGCTCCTCTAACTGATGGCATGTTGAAGTACATGGACCAGTGGCAGCGAAGGGATCTGATCCAGAGTGGGCCACTCTAGAAGGCCAGGCTACAATCACCATGGGCCAGTGTGTCACCAAATGCAAGAATCCTTCATCAACCTTGGGCAGCAAGAATGGAGACCGGGACCCCAGCAGCAAGTCACACAGCAGGCGGGGGGCTAGCCACCGTGAGGAACAGGTGCCACCTTGTGGCAAACCAGCTGGGGATATTCTTGTCAATGGGACCAAGAAAGCAGAGGCTGCCACCGAGGCCTGCCAGCTGCCAACTTCTTCTGGAGATGCAGGGAGGGAGTCCAAGACCAATGCTGAGGAGTCTTCCTTGCAGAGGTTGGAAGAACTGTTCAGGCGCTATAAGGATGAGCGGGAGGATGCAATTTTGGAGGAAGGCATGGAGCGCTTTTGCAATGACCTATGTGTTGATCCTACGGAGTTTCGAGTGCTGCTCTTGGCCTGGAAGTTCCAGGCTGCTACCATGTGCAAATTCACCAG
Seq A exon
GTTGGTTACAGATGCTTTCATGTCAGGAAGGGACCAGAGGAGGAAAACATGACATTGGGTAGTGGTGCCCACTAGGACAGAATTGGAATGGCTTCACAGGTTTGGGGCAAGTGGTCCCCATCCCCTTCCTGGCCATTTTCTCTAAGCTTAAGTATCGAGTTGTAGTTCTAGTCCAGAGAACTTCCTAGATTCTCCTAAGGAATTAATTTTTCTATCCTGTGTCCAAAACTCGTAGCAGAACTACTGAGTATATCTCTCCAGGTAGGTAAGACTCAGGGATTTGTATCTCTGCAAAGCTTCCTTGTCTAATATGTGCTGTTCTGTGTTTTCCTCACAGAATAAAGTGTTGCCTGATTGATAGATCACATTTGAATTCACAAAAGCACCAAGAGGCAATCCAAGTTACTGGGCACCGACCCTCTACCTAAAATTAAATAAGGACTAAGCAGTGTGAACACTTCTGTTAACTGCTGCTCAGCCCTCCTGACAACTAGCTGCTCAGAACTTGTCTTTTATTCCTTCACATGTCAGTTTAGTCATTTATCTGTAGTCTGCCAGGCACTTAGGTGTCCATAGACTGTCACTGGGAATATACCTCTACTGCTTTTGGAGTTCTCAGCTTGTTCCTTTAAGCCAGGCCTGTGTGCAGCAAGGACAGCTGGCCCCAAATATCAAGTAGCAGTTGTACAATTTGTCACAGTTATATATCCATATTGGGGTTGTTTGTATACAAGGATATGGCAGGGTCATGGCAGACCATGGTTTAAAGAGTGCAGGGTTATGAAGAAGAACTATAGTGGCCTGAAACTGGATATGTAGAGCAAGCAGGCCTCAAACTCCAGGTTCTGCCTGCTTCTTGAGGGCTCGGATTAAAGGTGTGAGCCACCATACCTGACCTGTCAGAAGGAACTTTAAAACACAGCTAATTTATATGACCTTTTCAATAAATTGAATGCCTCACCACTACAGTCCCTGAGATAATCAGTGTGAAACCCTGTTAGTGCTGTATACAGTTAAAAAGTACATATGCAGCTGGGTGTGGTGGTACCTGTCTGTAATCCCAGCCCCCAGGAAGCTGAGGCACAAGGAAGAGAATTCAAGGCTAGTATGGGTTACATAGTGAGATCCTATCTCATAAAACAAAAACAAAAGTAGTTAAAAGAAATTTTAACTACATAGTTTCGGCCCTATGTATGTGTACATGCATGTGCACATGTGCCATGCTTTAAATGTGAAGGGACCAGGGATAACTTGAGGGAGTTGGTTTTCTTTACCATGTAGGTTCTTGGGATCAAAATCAGGTTATCATTCTTGGTGGCAAGTACATTTACCTGCTGAGCCTTCTTGCCATGCCCCCAAAGGCACATTTGTTGTTTTCCATTTTATTTTATATGTATGAGGGTCTTGCCTCATTGCATATCTCTGAGGTGCATGCCTGGTATCTTCAGAGGCCAGAAAGGTGTGTTATATCCCCTGGAACTGGATTTGAAGTTGCCATGTACGTTGTGGGAACTAAACTCGGCTCGATCTATCCACCCACCCATCTACTTTGGAGGCCAGGTCTGACTGCGACTGCACAGCCTTAGCTGGCCTTAGTAGACCAGGCTGGCCTAGAAGAGGTACTGTTTTTGCCTTCCGAGAGCTGGGGCTGGGCTGGGTGTTAGCTGCGCGTATATCCTTGCCTCCTCATACACTGCACCACTCTTACTTATTAATCATGCCTTCTCCTACCTGTTGCAG
Seq C2 exon
GAAGGAGTTTTTTGACGGCTGTAAAGCAATAAGTGCAGACAGCATTGATGGGATCTGTGCACGTTTCCCTAGCCTCTTAACAGAAGCCAAACAAGAAGATAAATTCAAGGATCTCTACCGGTTTACATTTCAGTTTGGCCTGGACTCTGAAGAAGGGCAGCGGTCACTGCATCGTGAAATAGCCATTGCCCTGTGGAAATTAGTATTTACACAGAACAATCCTCCAGTATTGGACCAGTGGCTAAATTTCCTAACAGAGAACCCTTCGGGAATCAAGGGCATCTCCCGGGACACTTGGAACATGTTTCTTAACTTCACTCAGGTGATTGGCCCCGACCTCAGCAACTACAGTGAAGATGAGGCCTGGCCGAGTCTCTTTGATACCTTTGTGGAGTGGGAAATGGAGAGAAGGAAAAGAGAAGTGGAAGGGAGAGGTGCACTCAGCTCAGGGCCCGAGGGCTTGTGTCCAGAAGAGCAGACTTAGCTGCTCTGTTCCAGGAGCAGCACTGAGGATCTGCCTGCTGCCCTGCAGCCAAGTGAGGAATTGGACCTTTCTGGAAATTACCGAAGATCCGGATATTTTCTACTTTCACCTTTCTCTGCCTTGTATTTGAAAGGGCTCTAAAATGCTGTATCATGTTTTAGGCACTTTCTTCATTTTTTTTTTTGGGTTATTTTGGTTATTTCTTTTTGGGGGTGGGAAATCCCCCCAAAATATTTGAACCTGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014037:ENSRNOT00000019167:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=0.124
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0355610=Cullin_binding=WD(100=74.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGAGTCCAAGACCAATGCTG
R:
TCAGAGTCCAGGCCAAACTGA
Band lengths:
352-2092
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]