BtaINT0051356 @ bosTau6
Intron Retention
Gene
ENSBTAG00000014319 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr16:40371968-40378151:+
Coord C1 exon
chr16:40371968-40372128
Coord A exon
chr16:40372129-40378008
Coord C2 exon
chr16:40378009-40378151
Length
5880 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
ATTTGTTTTGTTTTATTTAGCAA
3' ss Score
7.58
Exon sequences
Seq C1 exon
GTTACGTGGGGGTGGTAAACAGGAGCCAGAAGGACATAGATGGGAAGAAGGACATAAAGGCTGCCATGTTGGCAGAAAGGAAATTTTTTCTCTCACACCCGGCTTACAGACATATTGCTGATCGGATGGGGACCCCACACCTTCAGAAGGTCCTTAATCAG
Seq A exon
GTAAAAATGGTTTTTCAATCAACAAGAACAATTATAAAATATGTGAATGGCTATTGGAATCCATATTTCTTATTTTTATACTTTTTTCTGAACTATTTAGCATAATAGTATTAATAGAAAAGTTAAAAGATGAATATGAATACTTAGACCCATGCCATTAGTAATTCTAAATGACCAGAATCCACCTTAATATTATTGAAAGAATAGTGTACTAAGCAGAAATACGTATTTATTTACAAACAGTGAACAGGGGAACACATTTTAGCACATATTTGTTCATAATATATAATTGTTTTAAGGAGTTAAACTTGCATCTCTCTGAAAAGTTTGTCTCTTGTCATCTGTTTTTTTTTTGAAATGTCAATCTGTGATGGTTAAGTTAAAATTTCTTTATGATTTTGTTTAGGATTGGTTTGATCCTTAATTTCCAATCTTAAAAACAAATAAGCAATCACTGATCTTCATTCATCTAAGAAACTTTTCCAGATAACCCCTTTCCTCACAACAGATAGAATTAGGCCCTTTGCTTCCCCTCACTTCATGCATATTGGAGAAGGCAATGGCACCCCACTCCAGTACTCTTGCCTGGAAAATCCCATGGATGGAGGAGCCTGGTGGGCTGCAGACCATGGGGTCGTGAAGAGTCGGACACGACTGAGTGACTTCACTTTCACTTTTCCCTTTCATGCATTGGAGAAGGAAATGGCAACCCACTCCAGTGTTCTTGCCTGGAGAATCCCAGGGACGGGGGAGCTTGGTGGGCTGCCGTCTATGGGGTCGCACAGAGTCGGACACGACTGAAGCGACTTAGCAGGTGCAACTTCATGCATATATACATTTCTTCCATAAAAATTTAGTGTACTTTTTTTTCATATATTTTCCAGTCCCTAGTAGAATTGTATCATAGTCATTGAGTATAGAGCCTCCACCCCAAGTTTTGATTACATTGACTCAGATGGTGAGCAACTTTTCTCACAAAAAGTATGCTTTAACTTTTATTTATGAACTTAAATAAGTCAAGTAGTTAACAGTTGTTCTGATTGTTCCCTCCTAGGTGTCAGTAGAGGCTAACACAACAGTAGGCTACTAGTAACATTATATCTGAACAATTTAGGCAGCAATTGAAGCAGTTTTAGAAAATAAAAAACAGTAGTATACTTGTATTTTAAGTGATGTAACACAGACTAATATAAAATTTGTATTTTTAAATTAAGGGTAGATGAATATTTGGAAGCCATAAAGCAATAATATAGTTGTCATTTAAAAAATTTTAACTTGTTTTGGAGAAGGAAGTTTGGTTTGTCATGCAAGAATCATGATATTCTATCAATGTATTTAGCTCTGATAAAACTATTTTTTGATTTCTGCTCTCATACCTGTATTGGGCTAAGAAAAATGCAAATAAATGAAAAAAAAAACTTAGAGAAAAGTCACTAAAATAATTAGAAATAATAAAGTTAGAAATATGAATACTGGAAAAGTAGAACAGGTATGCTTGACCATTTGGTTATTACAGGTGACCCATAAAGTATGGCATAACTGATTCTGGTTGACTGAAAATTGAATAAATATTATACTAAAGATCTTTCATTTCCTGTATAATCAGTTTCTCTATTGCTTCAAGGATCTTCACACTGTGTTTGAAATTAGGATTTTTTTTTTTTTGCCATGCCATATGGCATGTGGGATCTTAGTTCCCCAGCAAGGGATTGAACCCTTGCATCGAAAGCACACTGTTTTAACCACTGGACTTCCAGGGAAGTCTCCTGAAATTAGGATAATTTTATTGCTGATCTTATGTGTACCAACACGTCTGACCCTGAGGGACTCTTACTATAGCAAAAACTGAAAAAAGGACAGGATATTTTTGAGGAATTGAAAAGAATATCATTATGGCTGGAGGTCAGAGAGTGAGTTGTAAGAGAAGAATGTGGAGATGAAGGCAGTGGCTGAATCCTATAGTGTTTGTAAGCAAAGTTAAAGATTTTGGTTGTTATCCTAAGAGCCCTGGGGAGTCAGTTGTTTAAGGAATCTGAGGAGGGGAATAACAGTCACATCTGTGGGTTAAAATGATTATGGTGGTTGCAAATAGGAAGATCAAGAGTAGAAATGGGGAAATGAGAAGAAAGAAAAAAAGAGAATTGAGAAGACCTCTTACTTATGAGTCAAAGTGAGAAATGATGGTAGCCTGGTCTTGGTTAGTGCCAGTGGAGATGGAAAATGAATCAGATTTGGGGCATATTTGGGAAAATTGAGAACTTGGCAGTGGATTAGCTCTAGTGATTGACAGAGAGGGAAAGTCAAGGATAACTCCCAAGTTCCAGGTTATTATGAAATCACCAAGATGGAGAAACTTCTGAAGGGAATATTAGGTACTTGATTTCAGTCATGTTGAGGTTAACACTTCCAAGAAGAGAAGTTAGGAAAGTCAGTTAAGTGGTTACTATTACTCTTAGATCTGGGGTTTGTTCTTGGGCATTGCTACTGGGAATGCAGTCTTCTCCATTCTTTTATTTTCTGCTTCAAAACCATAATGGCAACACATGCCAGGGGAATAACATGATAAGTCTGTTGGAGGAGTGTGGAATTTCCTCAGTTCTGTCTCGTCCCAACAGAAATTTGAAGTGACGGACCAGATTAAAGCCCTTGGACAGACCCTGTCACAGCCCTTGGACAGACCCTGTCACAGCTCTCAGACAGATCGGTGTTACAGCTCCATGTTACAGCTCAGTTTTATTTAGAAAATAAAGGAAAATACATCCTTCAGGCATGAGGGCATGCCGACCCAAAAGACAAGAAGAGAAGAGGGGAGTTACCCCCGGCCCTTTGGCTCCTCTTTTTATGTGGTTTTTATCTCCTCCCCCTGGGCTTGCCCTATGTAAATTGGGCTAGCCAGGAGTGCTGTTTGTTCTACCTGAGGTCCTCACTGTGGTCCTCAGACCTTCCTTTGTTCTATTTTCTCAAGCTTTTCCCTTCCTTGTCTTTTAGCCACTGCCATTCTGGACTCCTTTTTCCTATTCTAACAAGTCATAACTATGGACAAGGTTTTAGGATAGGTGTGAACTATTGACAGTTAAATAACTTGATTTATTGAATAGATATATCCAGATAACCTTGAATATCCAGATAACCTTGAATCTGCCTGCAATATGGGAGACCTGGGTTCGATCCCTGGGTTGGGAAGATCCCCTGGAGAAGGGCATGGCAACCCACTCCAGTATTCTTTCCTGGAGAATCCCCATGGACAGAGCTATTGTCCATAGGGTTGCAAAGAGTTGGAAAGAACTAAGTGATTAGGCATGCACATGGGTAAGCTCGGATAAACATAAATGATTTTAAATGGTTCTTCAGTTGGTTTGGGTCTACTTATCTTATTCCCCTTATTTTAAATTTAAAATACACAGACGAACTATACAAAAAAGATCTTCAGGACGCAGGTAATCATGATGGTGTGATCATTCACCTAGAGCCAGACATTCTGGAATGTGAAGTCAAATAGGCCTTATTAAGCATCACACAAACAAAGCTAGTGGAGGTGATGGAATTCCAGTTGAGCTATGTCAAATCCTAAAAGATGATGCTGTGAAAGTGCTGCACACAATATGCCACCAAATTTGGAAAGCTCAACAGTGGCCACAGGACTGGAAAAGGTCAGTTTTCATTCCAATCTTAAAGAAAGGCAATGCCAAAGAATGCTCAAACTACTGCACAATTGCACTCATCTCACACGCTAGTAAAGTAATGCTCAAAATTCTCCAAGCCAGGCTTCAACAGTACATGAACCTTGAACTTCCAGATGTTCAAGCTGGATTTAGAAAAGGCAGAGGAACCAGAGATCAACTTGCCAACATCTGCTAGGTCATTGAAAAAGCGAGAGAGATCCAGAAAAACATCTATTTCTGCTTTATTGACTATGCCAAAGCCTTTGAGTACGTGGATCACAACAAACTTTGGAAAATTCTTCAAGAGATAGGAATACAAGACCACCTGACTTCCCTCCTGAGAAATCTGTATGCAGGTCAGGAAGAAATAGCTAGAGCTAGACATGGAACAACAGCCTGGTTCCAGATCGGGAAAGGAGTACGTCAGGCTGTGTATTGTCACCCTGCTTATTTAACTTATGTGCACAGTATATCATGAGAAACGCTGAGATGGATGAAGCACAAGCTGGAATCAAGATTTCCAGGAGAAATATCAATAACCTCAGATATGCAGGTTATACCACCCTTATGGCAGAAGGTGAAGAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTAAAAAAGTTGCCTTAAAGCTCAACATTCAGAAAACTAAGACCATGGCATTCAGTCCCATCACTTCATGGCAAATAGATGGGAAAACAGTGGATACAGTGGCTGACCTTATTTTTTTAGTCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACACTTACTCCTTGGAAGGAAAGTTATGACCAACCTAGATAGCATATTCAAAAGCAGAGACATTACTTTGCCAACAAATGTCCATCTAGTCAAGGCTATGGTTTCTCCAGTAGTGATGTATGGATGTGAGAGATTGACTATAAAGAAAGCTGAGCACCGAAGAATTGATGCTTTTGAACTGTGGTGTTGTAGAAGACTCTTGAGAGTCCCTTGGACTACAATGAGATGAAACCAGTCAATCATAAAGGAAATCAATCCTGAATATTCATTGGAAGGACTGATGTTGAAGCCGAAACTCCAATACTTTGGCCACCTGATGCAAACTACTGACTCATTTGAAAAGACCCTGATGCTGGGAAAGATTGAAGGTAGGAGGAGAAGGGGACGACAGAGGATGAGATGGTTGGATGGCATCACCAACTCAATGGACATGAATTTGGATAAACTCTGGGAGTTGGTGATGGACAGGGAGGCCTGGCATGCTGTGGTCCATGGGGTCACAAAGAATTGGACACAACTGAGTGACTGAATCGACTCACTGACTTTAAATTTATTATTCTTTTTCCTAGATTTCTATAACATTTACATTTCTCTTGATTCTGAGTTTATTTCTTAAGCCATGCAAAAAGGTGATCTTTTTTCCTGTTAATTCAGACTTAATTATATTGTAACAGAAAGAGCATTAGTCAGAGGGCTAATCAATCTGAGTTTATATCCCACCTTTATTCTCAATTAGTTTTGTCCCTCTTAGAAAATCTGTTAGAGAATTTTCTTTATCCTAAGCTTGAGGTGTCAGCAGATGACTTCAGTGGAAATGCCAAAGCAAGTGGTTAGGTAGAGGTATCAATACCAGGGCTTTTTATATACAACCTGTTGAGGGTGTAAGCTAGGGACTAACCACAGTTGGACTGGGGCCTAAAGATGGAGGAAAGAGGAAACACCTGCCTGAGCTATAGAATGGAAAGGAAGTTAACAACTGACAGGTACATGGGTATGAATGAGCTCCACTGGTGGGTGAGCCTTTTGGTTCTGAGAATTCAGGCAGCACCTGTCATTCTCTGCTTCTTTCATTTGTATCACATTCTAACTTAAGGTTCCTTTTCACAGGGTAGCTGATCTGACAGATTAGTCCATACTAAGGTGTCATTAGGCAGCTTCATTAGTAAACTTAGCTGCCTTTTAATAGGGTATCCCCGATGTAAAGAGATAGTCTCAGCTAGTGACTTTAGCTGAGGGAATTTTGACCTGGGGTGTAGGCAGTGGAGGAGAGAGCTGGAACTTCTCACATCTGTCTACACAGTCAGACTCACATGTGTGTATGACTTTCTAAGGTTTTGAGTGATCTGGAAAACAGTGAAGGCCAATTTTTATCTTCCGAATTGAACTTCCGTCTCTTATATGTGTGCATGAATTTGTTTTGTTTTATTTAG
Seq C2 exon
CAACTTACCAACCACATTCGAGACACCCTGCCCAACTTCAGGAACAAACTACAGGGCCAGTTGCTGTCCATAGAACATGAAGTAGAAGCCTACAAAAACTTCAAGCCAGAGGACCCCACCCGGAAGACGAAAGCATTGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014319:ENSBTAT00000017776:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.167
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(17.9=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development