MmuINT0051818 @ mm9
Intron Retention
Gene
ENSMUSG00000040265 | Dnm3
Description
dynamin 3 [Source:MGI Symbol;Acc:MGI:1341299]
Coordinates
chr1:164248712-164251243:-
Coord C1 exon
chr1:164251083-164251243
Coord A exon
chr1:164248855-164251082
Coord C2 exon
chr1:164248712-164248854
Length
2228 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTTTGCTGTGTTTTATTTAGCAA
3' ss Score
8.52
Exon sequences
Seq C1 exon
GCTACGTGGGGGTGGTCAACAGAAGCCAGAAGGACATAGATGGAAAGAAAGACATTAAGGCAGCCATGTTGGCAGAAAGGAAATTTTTTCTTTCTCACCCGGCGTACAGACACATTGCTGATCGTATGGGGACCCCACACCTCCAGAAGGTCCTGAATCAG
Seq A exon
GTAAAATTATTCTTTTAAGCAGTAAGTATAATTACGAAAGGTATAAATTACCAGAATGAATCGTTCTTATTATAAAATTTTATTTTGCCCAGGTAAGACTCACTCTGCTTTTGATAATAATTTTCAACACTAATTATTTAGGCCATTTACCATTATTTAGACCACTTACCATTCTCATTGAAATGAATCCACCTCAATATCATTGATAGTATCCAAAGAAAAACCACACTCCGATTTAGGAACAGTGAACAGCAGACACACGTGTGAACATGCTCTCACTCACAGTATACAATATCTTAAGTTAAACTTACACAGCTCTGACAAGGTAGTCTCTTAGGATCTGTTTCAAATGTCCAGCTGTGATGGTTAGGTTAGAGTCTTCCATTAACTGTTTTATGGTTTTATTAAATCTTTATTGGTTTCTTAATTTAAAATATTGAAACAATAAATCTTGATGAAGTAGTCATTGATTTCCACTAACCTAAACCATCTTTCCAAGATAATGCAATCATTCAAAATAAATAGATTTGGAATTGGCCTTTAGCCCACCCTCTTCTGTTCATCACATACATCATTCCCAGAAGTCCTCAGTATACTTACTTACCATATCTTCTTTCCATAAGGGAGTTGAATATCTTGTCAAAACAGGCTTCCTTCCCGAGTCTCCATTGCATTGATTTACATTGTGAGTAGTGTCTGTCACAGATATCCTAATAGTTTCTATATGAACTCTTCTTTATGAACGTGGTCTGCCAATGAGTTGATCAGTGAATGCCCTGATGTCGGCTCCTTGAAGGAAGCTGTCATGGTAACAGTAGCTTTACTACTTGGACAAAACAAACTGAGGAAATTTTAGAAAATAAAGACCAATAATATACCTTTAAGCAATGTAGCAGACTACCATAAAATTCATGCTTTTTAATTAAGGGGAAACGAGCATTTAGAAGCCACTGGGCAGCATTTGGCTGTATCACTTAAGTCACCAATACATTTTAAACAGCTACACAAGTTGGTCATGTAAGAACCACAGTATTCTTCTACCAGTATAGCCATTATAGCACCAGTATAGCCAGTATAGCACCAGTATAGCCAGTGCTAGTAACACTTCCTACGTTACTGCTCCCATAACTATACTGGCCTAAGTAAACTATAAACAGATTACGAGATATCTTAGAGAAAATTCACTAGTATGCTTAAAAATATAAAGTTAGAAATAAAGTAGGTTTTGAATAGGCGAAAACCTGAAGGGTGCAATTCACCTATTTAGGTTCCTGGTGATCACTAAGTTAGGACATAACCGAATGAAATTTGACTGGATTTTGTATGGAAGATTTTTCCTTTCCTATGTAAGTGCTCTCTGTTATTTCAAATATCTTCACTCTGTTAGAAAGACAGAGTGGTTTAAGAGACTTGATAAAAAGAATAAAAAGGTCAGGTTGGTGAGTTTAAAGGAATACTCAAATCATAGGCAGGAAGATTAATTGTAGACCACATAGATTTAAAATTGTGGAGATCAGTTAATAGGAAAGTGAAAAAATGTACTAGCTCGGTCTTTGTCAGGGTTAGTAGCTTTGAGAGATGCTGACAAGAGCCGAGAACTTAGTGACACAATAGAGCTTGTGATGGGTGACAGAAATCTTTAGTGGGTAACTAGTTAACCAGACTAACTCCCACATTCCCAGAATATTAGGAAGTTGGACACCTGTAGGAGAAGTCGGGTGTGCTAGTTGGCTTTCACAGATATGAGAAAATACCCTAAATAAACAACTTACAAGGAAAAGAGACTAATTTTGGCTACTGCTTTTGGAGTTCAGTTCATGGTCATCTGATTCTACTGTGCTGAGCCTTCATAGCAGAGAAGGTTGAAGAAGAAACCAAAGTCTCAATGGCTTTCAAGGGCATGATTCCCGCAATTTAACTTCTTCCCAGTAGAAGAACACCTATGTCCTAAGTGTTCTAACAACCTTTCAAGGTTGGTCACCAAGCTTTTGGGCATTTGAAGAAACCACAGATTCAAACTGTAACAACTGGGTAGTTAATTTGGGTGTGTTGAGGCTGGGGTGTTATTTATGGATCCAGAAGGGAATGCTGAATGTATATGCCCACAGCAGAGACAGAAAGTCCTGTTTGGACTTGGATAATGAGAGGCAACAATGGAGGCTGAAGTTTACGTCATACACTGATCTTCATGCTTATATATGTGTCTGATTTTGCTGTGTTTTATTTAG
Seq C2 exon
CAACTTACCAACCATATTCGAGATACTCTGCCCAACTTCAGGAACAAGCTACAGGGGCAGCTGCTCTCCATAGAACATGAAGTGGAAGCCTTCAAAAACTTCAAACCGGAAGACCCCACAAGGAAGACCAAAGCCCTGCTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040265-Dnm3:NM_172646:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(18.0=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: