DreINT0058853 @ danRer10
Intron Retention
Gene
ENSDARG00000032238 | dnm3a
Description
dynamin 3a [Source:ZFIN;Acc:ZDB-GENE-040724-76]
Coordinates
chr20:14997848-14998238:-
Coord C1 exon
chr20:14998078-14998238
Coord A exon
chr20:14997991-14998077
Coord C2 exon
chr20:14997848-14997990
Length
87 bp
Sequences
Splice sites
5' ss Seq
CAGGTCATA
5' ss Score
3
3' ss Seq
CTTATCTCATATGACTTTAGCAA
3' ss Score
4.7
Exon sequences
Seq C1 exon
GTTATATTGGTGTGGTAAATCGTAGTCAGAAGGACATTGAGGGGAAAAAAGACATCAGTGCAGCTCTGGCAGCAGAGAAGCGCTTCTTCAAGTCACATCCAGCATACAGACACATGGCAGACTACATGGGCACTCCATACTTACAGAGACTCCTCAACCAG
Seq A exon
GTCATATAAAGTAGTACTACAAACAACATTAAATAATATTGACAAATAACGCCTTTAATTATATGTTCTTATCTCATATGACTTTAG
Seq C2 exon
CAACTTACCAACCACATCCGTGACACGTTACCAGCATTACGTAGTCGACTACAAGCCCAGCTTCTTTCACTGGATAAAGAGGCTGAAGAGTACAAGGGTTTGAATCCAGATGATCCCTCGCGCAAGACCAAGGCTTTAATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000032238:ENSDART00000152641:7
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.188
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(18.0=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGCAGACTACATGGGCAC
R:
CGCGAGGGATCATCTGGATTC
Band lengths:
171-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]