RnoINT0049874 @ rn6
Intron Retention
Gene
ENSRNOG00000026490 | Dnm3
Description
dynamin 3 [Source:RGD Symbol;Acc:727949]
Coordinates
chr13:80223407-80226070:-
Coord C1 exon
chr13:80225910-80226070
Coord A exon
chr13:80223550-80225909
Coord C2 exon
chr13:80223407-80223549
Length
2360 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTTTGCTGTGTTTTATTTAGCAA
3' ss Score
8.52
Exon sequences
Seq C1 exon
GCTATGTGGGGGTGGTCAACCGAAGCCAGAAGGACATAGATGGAAAGAAGGACATTAAGGCAGCTATGCTGGCAGAAAGGAAATTTTTTCTCTCTCATCCAGCATATAGACACATTGCTGATCGGATGGGGACCCCACACCTCCAGAAGGTCCTGAATCAG
Seq A exon
GTAAAATTATTTTTTTAAGCAGTAAGTGTAATTATGAAAGGTGTAGATTACCAGAATGAACATTTCTTATTATAAAATTTTATTTTGTCCAGGTTAAGATTCACTCTGCTTTTAATAATTTTCAACATTAATCGTTTAGATCCACACTCTTACCATTCTCAAGGAATCCGCCTCACTATCCAAAGAAAAACCACACTGATTTAGGAGCAGTAAACAGGCGACACACACGTGAGCATGTATCCACTCACAGTACTCAGCATCTTAAGCTAAACATACACAGATCTGACAGGGTAGCCTTTTAGGATCTGTTTCAATGTCCAGCTGTGATGGTTATGTTAGATTCTTCCATTAACTGTTTCATAGTTTTATTAAATCTTTATTGGTTTTTTAATTTAAAATATTGAAGCAATAAATCTTGATGAAGTAATCATTGATTTCCACTAACCTAAAACATCTTTTCCAGATAACACACTTACTCCAAATCTATTTATTTGGAGTTGGCATTCGGCCTACCCTCTTCTCTGCATCACATACATCATTCCCATAAGCCCTCAGTCCACTTGCTTACACATCTTCTCTCCATAAGGGAATTGAACATCTTGGCAAGCATGGGTAGTCATTGAAAACAGGCTTCCTTCTTGAGTTTCCATTGCATTGACTTACATTCTGAGTTGCTTCTGTCACAAATATCCTAACAGTTTCTATATGAACTCTTCTTTATGAATGTGGTCTGCCAATGAGTCAGTCATGAATGTCCTGATTGTTGGCTCCTTGGTGGAATCAGAGGAAGTTGTCATGGTAACAGTAGCTGATACTGTGTCTGGACTACTTGGGTAAAACAACTGAGAAAGTTTTAGAAAATAAAGACCAGTAGTATACATTTAAGTGATGTAACAGACCACCATAAAATTCATGCTTTTTAATGAAGGGGAAATGAGCATTTAGAAGCCACGAGGCAGCATTTGGCTGTATCATTTAAGACACCAGTACATTCTGAACAGCTACACAAGTTGGCCATGTAATAACCACAGTATTCTTCTACCAGTGTAGCCAGTGTTAGTAACATTTCCTATGTTACTGTTTCCATGCTCCTATTGGCGTAAGTAAACTAGAAACAGAATGAAAGCTATCTTAGGGAAAAATCTACTAATATGCTAAGAAATTCAAAGTTAGAAATAAAAAAAGGTTTTGAATAGTAGAAACCCTGAAGGGCATGATTCACCCATTTCGGTTGCCAATGGTCACTAAGTCAGGACATAATTGGATTCTCATTGGATGAAATTTGGCTGGATTTTGTGCTGAAGGTTTATCCTCTACTGTATAACCACTCTCTGTAACTTCAAATATCTTCACTCTGTTAGAAATTAGGGTGACTTTATTAGTGATTCAATGCTGTGCCCCCCTCAAAAAAAAACAGTTGGCATGGACAAGTTGGGACGTAGCATGGTATTTTTGAAGGATTGAGAAGAGCGCCATCATGGCTGGAAGACATGGAGAGAGGGATCATTGCAAAGAGATGAAGTTGGGGAGGCAGACAGTGTCTAGGACCTCTAATGTTCACAAGTGTGAGTTAAGAACTTCTACTATTGTCCTGAGCAGAAAGATTGATTTAAGAGATCTAATAAAAATAATAAAAGGTAGAATTAAAATTGAGGAGACCGGTTAGTAGGAAGGTGAAAAAACTGTGCCAGCTTGGTCTTTGTCAGGGCTAGTAGCTTTGAGAAATGCAGATGAGAGCTGAGAACTTAGTGGCACGATAGAGCTTGGGACGGGTGACCAAAATCTTTGGTGAGTGACTAGTTAACTAAACTAAGTTCCACGTTCTCAAATTGTTAGGAAGTTGGACACCTGTAAGGGAAGTCGGGTGTGCTGGTTGGATTTCACAGATATGAGAAAGTACCCTAAACAAACAACTTACAAGGAAAAGAGACTAATTTTGGCTCCCGGTTTTGGAGTTGAGTCCATGGTCATCTGATTCTCCTGTGCTAGGCCTTCAAGGCAGAGAAGTCTGAAGAAGGAACCAGTGTCTCAATGGCCTGCAAGGGCATGATTCTTCCCACTAGCCCTATGTCCTAAGTGTTCTAATGGCCTTGCAATAGTCCTACAGCTTAGTGACCAAGCTTTTGGGTACTTGAAGATACCAGAGATTCAAACTGTAACAATTGGGTAGTTAATTTGGGTGTGCGGAGACTGGGGTGTTATTTATGGATCCAGAGGGAGATGGCTGAATGTATGTGCCCATAGCAGAGATAGGAAGTCCTGTTTGGGCTTGGATGGTGAGGGGCAACAGTGGAGGCTGTAGTTTACCTCATGTGCTGACCGTCATGCTTACATGTCTGATTTTGCTGTGTTTTATTTAG
Seq C2 exon
CAACTTACCAACCATATCCGAGATACCCTGCCCAACTTCAGGAACAAGCTACAGGGGCAGCTGCTCTCCATAGAACATGAAGTAGAAGCCTTCAAAAACTTCAAACCGGAAGACCCCACAAGGAAGACCAAAGCACTGCTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000026490:ENSRNOT00000067653:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.056 A=NA C2=0.146
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(18.0=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]