GgaINT1011671 @ galGal4
Intron Retention
Gene
ENSGALG00000003164 | DNM3
Description
dynamin 3 [Source:HGNC Symbol;Acc:HGNC:29125]
Coordinates
chr8:4653011-4655504:-
Coord C1 exon
chr8:4655344-4655504
Coord A exon
chr8:4653154-4655343
Coord C2 exon
chr8:4653011-4653153
Length
2190 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
3' ss Seq
TTCTATTGTTTGCTTTTCAGCAA
3' ss Score
8.49
Exon sequences
Seq C1 exon
GTTATATTGGTGTCGTGAACAGAAGCCAGAAGGACATTGATGGGAAGAAGGACATAAAGGCAGCTCTTCTAGCAGAAAGGAAATTCTTTCTTTCCCACCCAGCATACAGGCACATGGCAGATCGGATGGGAACACCATATCTTCAGAAAGTTCTAAACCAG
Seq A exon
GTAAAACCTGAGTTCTTTGTGGTATGAGACATCTTTTATAGTGATAGGACCAATATAAAACCTTCACTAAAATGAACCTTATTTATTCTTTTCTGCCTTTTAATTTTCACAGTGCAATTAACAAAGTAGCATATTAAAAATTGCACTTAGAAATATACTGTGGGACATAGAGGACCTAATTTGTAGGCACTTGTCAGTATTCATAAACCTACAATACTTAAGATTGCTAATTACAGAAATTTCCATCGTTGATAATATATAATGTTCAATCTTGATTTTCTTCCAAGAAATTATTATTTTATTTTTTATTCAAAAAATTACTCAGATTGGTACCTTATGCATCCAGACGTAAGCTAATAATGATACTGTTTGACTATGTGATTTTTCCAACTTTGGAAATTCTGTAATTGCAGGAATGTATAATTCTTTTCACCACCGTGTCCATGGGTATTGCCTTCATAGTGCCAGCCCTTAGCTTGAATAGTATGTGACCCTAATGATGACGAGTCTCAACAAATTCAAAAAGGGCAAGACCAAATCCTGCCTGTCCCCCTAAATTTACTGATGATGCTATGATCTTTTTTTAAAAAACAATTTCATTGTTATTATTACTGTTGCTTTGAAACTAAGTTTTATCAGCCAACCAGTGCTTTTGACATTCCTAAAATCTGAACTTGATAGTATTTTCTCCAGTTCATTGTTGAATTGTTGCTGTAGGTTTGGAATAGACAGAGGCTAGGTCAGCCTGGCTCTATCCATTTTGGATAGCAGCTGGAAGCAGCACAAGACATATTGGATAAGTAAACTACGTGGTTGGCCTGTTTTAATTTCTTGCTTCTCTGACTTTGCAGCTGTGTATCTTTACAACCAGGTTAAGGTATATTCTGGACGTGTTCAGAAAGAATGCTAATGCTATTTATTTGAGCCTTAGAAAAACAGTCTTCAACAGGATGCAAGAACTTGCTCGCATCCTACAGGCTTGCCTGTGTTCAGGATGTTTTTGTCTCTTTAAATGCATTGAAAGATTAATACCTTATGTCTTAGTTTTGAAACTAAACCGAGTTTCATATTCCTTTAAACTGTCTTATATGTTGTTGAGTTTATATACTAGTAACATTTTTGAGCTTTTTTTTCCATTTCGTTTATCTATTTCAGTATTAACTGTTGGTCTTCTGTTGCTGTTACTGTATGTAGAGTATTACATGAGAGGATGTATGCAAGAATTGTCCCCAAGTTATTAAAGCATTAGTGTTCGTGGTTCCAGGTAGCATGTAAGTTATTCTGCATCCACAAGGTGGTGCTCCAGGGAAACTTCTGCGTTTGATAATGCGCCTTTCAGGCCTGCTGAACAACTTTGGGGCTGAGTTTGCCTACTTTGGTATTTGACGTTCTTTATTTATACTCACGTGATTGGGAAGATCTGCAATATAGTGCAAAAAGTTCATTTCAGTTTAAATCAAGAAATGGATGCAGTGCATGCTTATTGTACAGTTGACAGTGCTGTCCAAACACATTACAACGTGTATGCGCAGAAGTAACTGAGATAAGAGCTTTTCTACAGCCTTTTCTACTCCAGTTTATTTTCCAGTGTTTTTAGGTATATTTTCATAAATGAAAACCAGTGTTCTTCAGTGATAAAACTTTATGTCAAGACTTTTTAAAAATATTTTTTTAAAGAAGTGCTGTTATCATTAATAAGAGGACTAAATCTCTTCTCCTTAGTATTCTGCATGCAACAAAGTAGAAGTGCTGTGAAAGTGACTTTTGTAAGTAGTGGAAGAGTGCTAAGTAGATACTCTGTATGCCTATACTTCCTTCTGTCACTGTTCTCAAGTGGTTTTGGATGCTCAGAATCAGCAAAATGGATGTTGGCAACAAAATGCTGAGTTATTATGAGCGATCATTTCAAATTAAAGTAACTTTTTAGCATATAGCTAAACAACTATGACATATTGGGCCTCACTGAGTGGAACAAGTCAAGAAGTTTTTCAAGAACTCCGTATAATGTGTAGGTGAAAGGGATGTTGTGGTGTTCTTTAACTGTCTCCATTGCTTCAGAGTTCAAAAGGAATTACACTGGTAAGCTAGCACAGGCTACGTTGGTATGTTTGGCAGCCAGAAGGAAATGGCTGTGCTCTTGCTTTCATCTTTATTAACATTATAAAAGTACTTCTATTGTTTGCTTTTCAG
Seq C2 exon
CAACTTACCAATCATATTCGGGATACCCTGCCAGCCTTCAGGAGCAAACTCCAGAGCCAGCTGCTTTCTATAGAACATGAAGTAGAGGTATACAAAAACTTCAGACCAGAAGATCCAACCAGAAAAACAAAAGCCTTGTTGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003164:ENSGALT00000005010:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.021
Domain overlap (PFAM):
C1:
PF0103115=Dynamin_M=FE(18.0=100)
A:
NA
C2:
PF0103115=Dynamin_M=FE(15.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]