BtaINT0052078 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003341 | DOK2
Description
Bos taurus docking protein 2, 56kDa (DOK2), mRNA. [Source:RefSeq mRNA;Acc:NM_001102002]
Coordinates
chr8:69724704-69726483:-
Coord C1 exon
chr8:69726299-69726483
Coord A exon
chr8:69725825-69726298
Coord C2 exon
chr8:69724704-69725824
Length
474 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
AGGCTTTCTCCCCCACCCAGGTA
3' ss Score
7.64
Exon sequences
Seq C1 exon
GGACTCCCCAAAAGGAGTTTGCTGTGACCGTGAGACCCACAGAAGTCAGTGAGAGGTGCCGGCTCCGGGGATCCTACACCCTCCGGGTTGGGGAGAGTGCCCTGGAGTTGTGGGGCGGCCCTGAGTCGGGCACCCAGCTATATGAATGGCCTTACAGGTTCCTGCGACGCTTTGGGCGGGATAAG
Seq A exon
GTGAGCAGGGGCTGCCAGGGGTAGGGCAGAGGAAGGATGAACTGTGAGAGAAAAGAGAGTGTCAGGGAGAGGGCCAAGGGGCCCTCAAAGGAAGAGAGAATGGAGGAGGGAGAGAAGGTGAGACGAAGACCGAAGACCGGCAGAAGAAAATCAGCCCAGCCCAGGGGCTGGAGGAGAGAACTGGGGAGGGAGACACGGAGGTGGAGGTAGGGGAAGGAAAGAAGAGGAAGACCTGGCTGGGAGTAGTGGGCGTGTGGAGGTTGAACTCTGCCAGTCTTCATACGCCGATGGATGGAAGGAAGAAGGAAAAAGGAGAGGGGTTTGTTTGTAAGAAAAGACTTGGAGAGGAAGCAGCTTGATGAGAAGGCCAAGCAGCTCCCAGGCTGGAGGGAAGTTGGAGGTGACGTGTTTGTGATTGGAAACTGGGTATAGGAGCAGCTGGCCTCCCATTAATAGGCTTTCTCCCCCACCCAG
Seq C2 exon
GTAACCTTTTCCTTCGAGGCTGGCCGGCGCTGTGTCTCAGGAGAGGGCAACTTTGAGTTCGAAACCAGGCAAGGCAATGAGATCTTCCTGGCCCTGGAAGAGGCCATCTCTGCCCAGAAGAACGCTGCCCCTCCTGGGCCCCAGACCCAGCCAGTCCCAGTCCCTGCGGTGCTGCCCCGGCCAGAGAGCCCGTATGCCCGACCCCACGACTCGCTGCCACCACCGTCGCCCACTGTCCCGGTGCCCACGCCCCGGCAGCAGCGCGGACTAGAGGGAGAGTATGCAGTGCCCTTCGATGCAGTGGCCCGGAGCCTGGGGAAGAGCTTGAGGGGCGTCCTGGCTGTTCCTCCCCAGCTCCCAGCTGACCCTCTGTACGACAGCATCGAGGATCACCCGCCCCCACGACCCGACCACATATACGATGAGCCTGAGGGGATGGCCGCCTTGGCCCTGTATGACAGCCCGCAGGAGCCCCGGGGTGAGGCCTGGAGGAGGCAGGCCACAGCTGACAGGGACTCCAGTGGCCTCAAGCATGGCTACATAGTGGGACAGGACTTCGCCGCCTCTGGCTGGCCACAAGGGACCGAGTATGACAATGTTGTACTTAAGAAAGGCCCAAAGTGATGGAGCGTGGAGGAGATGCGATCCCCATGGGACGCCAGTGCTGGAGTCCTGTCCAGATGGGGCCAAAGTTAGAGGCTGGTGAGAAGGAGCTGGAGTGGCAGGCAGGCCTCCTCTTCCAGCTTCTGGTGGTGACTCCTGGCCACCGCATCCCAGGAGCCCTGCTCTGCTCCTTCTTGAACCCTCAGCTTGATCAGTTTAGTCTGGTCCAAGGAATTGTCCCCTTCAGGGCATGCGGCATGAGTCACCATCTGAGGGCAGGAAGAGTGCCTGCAGAAGCCGCCCTTCTCCTACTCCTTCTCCACTTCCTCTTCTTTTGCCACCCCCGCCGGCCTAAGTGGAACCTCTGGCATTTAGAGGACAAAAGGATGTCAGCAAATCGCCCTGGTTCCTCGGTCTGTGTGGGCCACCTTTTCAGGGGACAGCCGTGGCCCAGGCATGCAGGAGAATGGCTGCTGCTTTCTGCCAGTTTTGGACTTCTCTGTGGCATTAAACGTTTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003341:ENSBTAT00000004337:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=NA C2=0.643
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(58.4=95.2)
A:
NA
C2:
PF0217412=IRS=PD(39.6=19.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACCCAGCTATATGAATGGCC
R:
CGAAGGGCACTGCATACTCTC
Band lengths:
351-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]