GgaINT1011785 @ galGal4
Intron Retention
Gene
ENSGALG00000026250 | DOK2
Description
docking protein 2, 56kDa [Source:HGNC Symbol;Acc:HGNC:2991]
Coordinates
chr22:1379780-1381157:+
Coord C1 exon
chr22:1379780-1379958
Coord A exon
chr22:1379959-1380443
Coord C2 exon
chr22:1380444-1381157
Length
485 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
GTGCTGTGCCCCTTCTCCAGGTG
3' ss Score
10.75
Exon sequences
Seq C1 exon
GCGTGGAGCACGACTTCGAGGTGACGCTGAGGGCCACCGAGTCCTCGGAGCGCTGCCGCCTGCGGGGCCGCTTCGTGCTGCGGGCGGGCGAGGAAGCCTTGGAGCTGCGGGACGTGCAGAGCAGGGATGTCCTTTACAGCTGGCCCTACCGCTTCCTGAGGCGCTTCGGGAGGGACAAG
Seq A exon
GTATGGGGATGCTCAAAGGGTGGGATCGTGGGGGAAGGGGGAGGCACTGGGAATCACTGAACCGTAAAACCGTTGGGGTTGGAAAAGACCTCCAGGGTCATCAAGTCGAAATGCCAACCTGTCCCCGCCACGCTCGTAGAGTTGTTAGGGTTGGAAAAGACCGCTGAGGTCATCACGTCAACTGTTGGCCCATACCCACCATACCCATAGGGTCATTAAGATTGGAAAAGATCACTAAGGTCATCAAGTCAACTGCTGACCCATCCCAACCTTGCCCATAGAGTCATTAAGGTTGGAAAAGACCTCCAGGATCATCACATCCAACTGCTGACCCATCACCACCACCCCCACAGAACCACTGAGGTTGGAAAAGACCACCGAGGTCACCGAGTCCAACCAACCCATCCCCACCGTGCCCCCTAACCGCGTCCCCAAGCTCCACCTCTCCCTCTTCCTTGAGAGATGGTGCTGTGCCCCTTCTCCAG
Seq C2 exon
GTGACCTTCTCCTTCGAGGCCGGCCGGCGTTGCGCCTCTGGCGAAGGGAACTTTGAGTTCGAGACCAGACAAGGCAACGAGATCTTCCAGGTGATCGAATCGGCCATCGCTGTGCAGAAGGAACGGGGTGGCCCTGGGGATGAGGGCACGCGGCCATGCCAACAAACCCAGCCCCCCGAGTGGGCCCAGGAGCACGAGGAGCACCGCGCCAAGAGCATCTACACCGAACCCTGCGGCCCCCTGATCCACACCAACCCCTCGGCCGTGCCCAAAGCTCCGGAGAAGGCCACGAGGAAGGATGCTGTGGGTGAATTGGAGTACGCCGTTCCCTTCGATACCATCGCCAAGTCGCTGATGGTTGGGAAATTCGGGAGCATCCTCCAGGGTCCCGCTGATGCTCCGGATCCGCTGTATGACAGCATCCAAGAGACGGGCGGGCATCCTCCGATGCCTCGTCCCCGTGCTAAACTGGAGCACATCTACGATGAGCCTGAGGGTGTGTGCACCCACACTGTCTACGATGAACCCGAGGAGGTGAAGGGCGAAGCGTGGAGGCTGCAGGCTGCCCCCGAGGAGCCTTTGGGGCACGAATATCCCTACAACCCACAGCGGGACGACTACGCCGTGCCCAAGAGAACCGTCCCACCGCGGCAGGGCAAGGAGTGGCTCGGGGACACCGAGTACGACAACGTGGTCTTCCAGTTGGCCAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026250:ENSGALT00000044208:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.668
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(58.0=96.7)
A:
NA
C2:
PF0217412=IRS=PD(40.0=16.8)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCCTTTACAGCTGGCCC
R:
ATCCTTCCTCGTGGCCTTCTC
Band lengths:
354-839
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]