DreINT0059467 @ danRer10
Intron Retention
Gene
ENSDARG00000075818 | dok2
Description
docking protein 2 [Source:ZFIN;Acc:ZDB-GENE-080721-4]
Coordinates
chr8:42542066-42545940:-
Coord C1 exon
chr8:42545765-42545940
Coord A exon
chr8:42543000-42545764
Coord C2 exon
chr8:42542066-42542999
Length
2765 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGC
5' ss Score
9.55
3' ss Seq
TGTAATTTTTCATAAAACAGGCA
3' ss Score
5.1
Exon sequences
Seq C1 exon
CAATGAAAGACTTTAAGGTGACAGTGAGGCGATCGGAGGCTTCTGAGAGATGCAGTCTGAAGGGAGTAGTACTTTTACGGACTGATACTGATAGCCTTCTTCTCAAAGACCCGAAGACAGGAGAGGTCCTGTACTCCTGGCCCTACCGTTTCCTCCGCAGGTTCGGACGAGACAAG
Seq A exon
GTATGCCTTTGAAAATACTTTGTAGTCAATCATTTAATGTTAGTTAGACGACAAGATGTGTCAATGTGTGATTCTTAAATAACTAGTTTACCCCAAATGATTATTTAAATTAAATTTTAATCCGATTAAGGCAATACTCTGATTAAGAGTATGTAAACAATAATTTTTGTATAAGTTAATCTGATTAAGGTCATAATCGAACAAAACAGAAATTGGATTAAGACATGAAGTATGCCAATTTTAGTCGCATTATTGAAGTGCAGAACAGATATGTACACACAGCAATCAAACTATTACCGTCATGTGTGCTGTATCAAGTCAAATTAAATAGTTGGTCCCACTTTATATTAAGTGGCCTTAACTAATATGCACTTACATAGGAACTAATAGTTTGTTACAATGTACTTATTGTGTAAATACATGTATTTACTGTGTACTTATGCTTACAATACAATACACTATTGACCATCCCTTACACCTTAACCTACCCTTAAACCTACCCATGCCACCAAACCTGTCCATAACCCAACCTCTATTCCAACCCAAAATCACCACAAGTGTTCTCAAATACATTATAAACACAGTAAGTAAATTGTATTTATTTATTTTTTTGATGTAAGTACATAGAAGTTAGGGACACTTAATATAAAGTGGGACCAAATAGTTTAATCTACTAAAACAACACTCTTCCACCAGTCCTTAATTCATACTCGAATACAATACCTTATTTTGTCATGGGGGCAAAAAGGAAATGTTCCTGAATAAAAGTGAAACAGTTAAATGCAGTTAGTGCAGTTAAAGCTGAAAAATTAAAAATGAAACACCCATAATTACATGAAACTCTTGAGGATACAGGGAGAGCGTGGTAATGCAATGACGTTAATTGATCTATGTGCTAAATCATGTAAAACGAGATCATGAAAGGAACATTCAAAAAGTAACGATGTAAACACCTTAATTATATTATTGTCCTAATCAGATTAAGGCAAATAATTTGATTACTGATGTAGAGGAAATCTAAGAGCGCCCTCATCATTCAAAGACATTCAAAGTCTAGAAAAGGAGCCAAAAACATTGTCAAACCAGTCCATGTGACTTTAGTGCTTCAGGTGTAATCATACAGTTTAGCTGAAAGTGTATTTTTGAAATAAGGCAAATGTAGAAGGAGAAAAATAAATTAAATGTGGAATATAGCTGCAATTTAAGGCTTTTATTCCTGACCCTGTTTTTATATAAAGTAAATGTTAAGTAAAGTCGATTCCATCAACTCTTACAGTATGAGTTGGGAGTCAAAGTCGACTTTGACAAACTTAGAATGGAAGACTAATGCTGTGCTCAGACCAGACGTGGAAGAAGGGTCAAGCGCAAGGGATTTACATGTTAAGTCAATGCAAAGATCGACATAGACATCCTGCGGAGTGAATGATGCAATTCGTGCAATTGATCGCTCGCAAATCGCTCGAGTTGGAATATCTGAACTTCAACGAACATCCGCGCTGCGTTAACCAATCAGGAGCTTTCGCTTGTAGGGGCGTGCTTATGACATAACGCCTGTTGTTATTGTCCTGGAGGGAAATCCTCCTGCCGACACAACAGCTGATCAAACTGGGTTCGGCTCAGTCGCAAGCACTGCTGAAAGCCTCGATCATCCAAGTTAAGTTTCTGGGGGAGTTTATGAACTCACAGACCTGGGTGCACCTCTGAAAGGATCTAGTGGACTCAAAGACTGCTCCAAACAAATAACGCTGTATTTCAGCCATAATAAAGAACATAAACACAGTTATTCCCTCAATTAAATCCATGTTAGCCATTTAGCAACGAAGCTAGAGTCATCGGGCAGACAAAAGCCCTTCACATGAGACAAATCCATGTCAATTGTGAAGTGAATTTGATGCGCGATTGAAATGGATTTAACACCCAAATAAAATAAGTAAACTCAAAACGTTCACATGCAAATAGCGTGATTTAACCGTGCAGGATGCGTCTGGTGTGAACACAGCATAAGGGTGTACTCAGACTAGGAACTGTGCCGGTGCACATTTCATCCCATTTCCCGGTTCGTTTGACAAGTTTGAGTGCTCTAAATTGTGCCCGGGCAGAGTTCAGTTGGCCAGCTCTTGCCGTTTGGAAGAGGTGGTCTAGATTGTGGTTGGCTTGGGGTCAGACGTAGTATGTTTGTAGTGTGATTGCAAAGCGCACCTGAATAGGAAAAACTGAAGACACGACTTCATTTTTAAGGGACTGTTTCCAGTGGATTTATTATTCATTCTTACATTTTAATTCCCACGAATTGTTATGGTTTATTAAAGATGCGAACACCTTGCTGTACCTCAGGTGCCACCATCAGTAAACCTCATAATACGTGCAGCACAATGACTTTCATGAACATTTCTGAGCATCAAAAGTGGTGGATATGTTCAGCAAAAGATTTGACTGTGTATCACTGCATTCCAAACGACTTAAAATAATACAAAACAATATAACTACAGCAATCTCCATTGTACTTAGCGCGTCTCTTTCTAACTGAACAGTCTTATCATCGATGATGTAAGTGTGCTCGGGCTTGGAGGGTAAAAAAAAACGTGTGAGTGCAGGCCGAGTGGGAAGGAGAAGGGGGAACAATCGCACCTAGGAATGGTTCAATGTAGTACACCCTAAGTTGGAACACACTCTTTTAAAAACATAACATCTTTCTGGTGAAAATGATCTTAAGCTAATGCTACTAATTCTGCAACTAATTACATCTGTAATTTTTCATAAAACAG
Seq C2 exon
GCAACATTCTCCTTTGAGGCCGGGCGAAGATGCGACTCCGGGGAAGGCAGCTTTGAGTTTGACACAAAGCAAGGCAACGCCATCTTCCAATCCGTAGAAGCTGCTATCAATCTACACAGAGTCAACATACCAGCAAAGCAGATGTCAAATTCAGATCGAGATCTCATGCCCTCTCCACCTCGAATGAGAGCCCCGGTGGAGAACATAGGTATCTATAGTATGGTGAGTGACACATCGATCAGAGATGGGGCCAAACCTCCACAAAACCCTCAACTCTCCAGACTGGACGCCCCAACAGAGAAGCTTCTCACCGGAGTCAAGAGTCTAAACTTGGACACCAGGCCACCGCCGCGAAAGAGTCAAGTCAAGAACTTCCGCAGCTGTCCCTTGGCCAACACCGAGGACGAGATGTATTCCCGGGCAATGGCCCCAGATCCGGAAAGAGGAAGTCCAAAGGAGAAGAGAGAACTGAAGGATAGACGTTCCACGTGCTCCAACCCAGAGGAATCGGACTATTCGCTGCCCTTCGATACCATTGCCAAGAATGTAATGGTAGATATTTTTGCCACAACAAACTTTCCACCAAACGCAGGGGAATCCAATTGTGAAAATAACAAGAAAGGCACTGCAGAGAACACTGAACCACTTTACGACATCATAGATGAGTCTGCTATTAGAAGCCGTTTCGCAAATAAACAAACGCATTCATACAAAAGAGTTGAGCACATCTATGATGAACCGGAGGGTTGTGGTGTTGCCCCAAATGCACCTCCATCACTCTATGATGAACCAGAGGAGGTTAAAGGTCATGCTTGGAAGATGCTGGGCACAGTAATGGATCCGAGTGGCCATGAGTACCCGTATAATGCTTCTGTTGATGACTACGCTGTTCCTAAACCTCCACGGAGGGCCTTGCTGGCAAAACAAATGGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075818:ENSDART00000135238:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.691
Domain overlap (PFAM):
C1:
PF154131=PH_11=PD(28.1=60.0),PF0217412=IRS=PU(86.6=96.7)
A:
NA
C2:
PF0217412=IRS=PD(39.4=12.5),PF049918=LicD=WD(100=48.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]