MmuINT0052588 @ mm10
Intron Retention
Gene
ENSMUSG00000022102 | Dok2
Description
docking protein 2 [Source:MGI Symbol;Acc:MGI:1332623]
Coordinates
chr14:70776816-70778495:+
Coord C1 exon
chr14:70776816-70776997
Coord A exon
chr14:70776998-70777458
Coord C2 exon
chr14:70777459-70778495
Length
461 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTTTCCCCCCTCACTGTAGGCA
3' ss Score
10.62
Exon sequences
Seq C1 exon
GGCTCTGCAAGGAATATATGGTGACCATACGACCCACAGAAGCCAGTGAGCGCTGCCGGCTCCGAGGGTCCTATACTCTCCGGACCGGGGTGAGTGCCCTGGAGCTGTGGGGTGGCCCTGAGCCAGGCACACAGCTATATGACTGGCCCTACAGGTTTCTTCGACGCTTTGGGCGTGACAAG
Seq A exon
GTGAGTGAGTGAAGGGCTGAGACCAAAGATGAGTTACCTAAGGAGAACAACGAGGGAGGGGCAGAGAGCCAATAAAGAGAGAGTGGATCGAGGAGGAAGGTCATCTAGAGAGACAGCAGAGGTGGGAGGGGAAGGAGTGAAAGCCAAGAGGCCTAGGTGAGGAGAGATGATGTGGAGAAGGGATGGGGAGGAGCGTGTTCTTGCCAGATGTGGTGGCACACAGCTATAATGTCAGCACTGAGGGGGCTGAGGCAGGAGACAGAGTTGAAGGCCTGCCTGGGCTACATGGTGAGAGCCTTTTCCCAAGTAAACAACCAACCCCAACAAACAAAATGCAGAGGCAGAGGGGCAAGAGCTCCAAGAGCTCCAAGAGAAGTTTCTGGTGCCAGGGTCAGCACTTTTCCATGTGGGTGGAGTCCAGGGAAGAACAGTTCTTTCCCTCTTTTCCCCCCTCACTGTAG
Seq C2 exon
GCAACTTTTTCCTTTGAGGCTGGCAGACGCTGTCTCTCTGGAGAGGGCAACTTTGAGTTCGAAACACGACACGGCAATGAGATCTTCCAAGCCTTAGAAAAGGTCATTGCTGTCCAGAAGAATGCCACCCCTTCCGGGCCTCCATCCCTGCCAGCCACAGGGCCCATGATGCCCACTGTGCTGCCTCGACCTGAAAGCCCCTATTCCCGGCCCCACGACTCTCTGCCTTCTCCATCCCCTGGCACACTGGTGCCTGGCATGAGGCCAGGGGCCCCTGAGGGGGAGTATGCCGTACCCTTTGATACGGTGGCTCACTCCCTGAGGAAGAGCTTCAGGGGCCTCCTGACGGGCCCCCCTCCACACCTTCCCGACCCACTGTATGACAGCATTCAGGAGGATCCTGGGGCCCCTCTACCTGACCATATATATGATGAGCCTGAGGGTGTGGCTGCCCTGTCCCTCTATGACAGGACACAGAGGCCCTCAGGGGAGACATGGAGGGAGCAGGCCACTGCCGATGGGGGTCCCAGCTCCCTCCAGCAAGACTCCTCTGTGCCTGACTGGCCACAGGCAACTGAGTATGACAATGTCATACTTAAAAAAGGCCCAAAGTAGGGGATGGCCAGAAGATGGGATATGTGGTTCCCAGGGAGGTCTTCGGAAGCTGTGGAGGGGAAATGGTGGCTTCTGGTAGAGTCCTTTTGGTTACTGCCCCTTCCTGGGCCCCAGGCTCGGTGTGCCTTATTTGTGTACTGTGTGAGTCACTAGCCTGGAGCAGAAAGAGGGCCCTGGAGGGACCCACCCTCCTCCTACACTTTTCCACTTCCTCCCACTGCCTTGGGTCTAAAGGGAACTGGGGCCATTTCTCTTAAGAGACAAAGGGTTTCCACAGATGTCCTGGCTCCTCGGTGTGGGCAGGCCTCCTGCCTATAGATGTTTTGTTCCTGGGACAACCCTGGCTTCTGGTTAGCAGCGAGAGTAGCTGTTGTCCCTCTAGCTCCCAGAGTTTTCTATACATTAAACCAATTTCGAACTAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022102:ENSMUST00000022698:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.789
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(58.0=95.1)
A:
NA
C2:
PF0217412=IRS=PD(40.0=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACAGGTTTCTTCGACGC
R:
GTGAGCCACCGTATCAAAGGG
Band lengths:
351-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types