RnoINT0050512 @ rn6
Intron Retention
Gene
ENSRNOG00000013922 | Dok2
Description
docking protein 2 [Source:RGD Symbol;Acc:1310966]
Coordinates
chr15:52453705-52456409:+
Coord C1 exon
chr15:52453705-52453886
Coord A exon
chr15:52453887-52454372
Coord C2 exon
chr15:52454373-52456409
Length
486 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTTCCCCCCCTCACTGTAGGTG
3' ss Score
11.98
Exon sequences
Seq C1 exon
GGGTCTGCAAGGAATATGCAGTGACCATACGACCCACAGAAGCCAGTGAGCGCTGCCGGCTCCGAGGGTCCTATACTCTCCGGACCGGGGTGAGTGCCCTGGAGCTGTGGGGTGGCCCTGAGCCAGGCACACAGCTATATGACTGGCCCTACAGGTTTCTGCGACGATTTGGGCGTGACAAG
Seq A exon
GTGAGTGAACCGAGCAGGCTGAGACCAAAGATGAGTTACTTAAGAGGAACAACCAGGGAGGGGCAGAGAGCCATTGGAGAATGGAGGGAGCCAGCAGAGGTAGGAGGACCCGGGAGGGGAAGGAGGGAAAGCCAAGAGGTCTAGGTAAGGAGATATGACTTAGAAGGGATGGGGCAGACAGAAGAGCTGTTGACACTTGAGCCATGTGTGGAAGGAAGAGGAGAGTGTTCTTGCCAGGTATGGTGGCACACAACTATAATGTTGGCACAGAGGAGGCTGAGGTAGGAGACAACAGAGTTGAAGGCCCTACCTGGGCTACATAGTAAGAACCTTTCCCCAAGTAAACAACCAACCTCAATTAAAAAAACACGGGGGTAAAAGGACAAGAGCTAAAAAAGAAGTTTCTGATGCAGAGGCCTGAACGTCTATATTTGGGTGGAGGTCCAGGAAAGAACAGTTCCATAACCTTTCCCCCCCTCACTGTAG
Seq C2 exon
GTGACTTTTTCCTTTGAGGCTGGCAGACGCTGTGTCTCTGGAGAGGGCAGCTTTGAGTTTGAAACACGACAAGGCAATGAGATCTTCCAAGCCCTAGAAAAGGCCATTGCTGCCCAGAAGAATGCCACCCCTTCTGGGCCTCCGACCCTGCCAGCCACAGGGTCCATGATGCCTACTGCGCTGCCTCGACCTGAAAGCCCCTATTCCCGGCCCCACGACTCTCTGCCTTCTCCATCCCCTGGCACACCGGTGCCTGGCATAAGGTCAGGGGGCTCTGAGGGGGAATATGCTGTGCCTTTTGACACAGTGGTTCACTCCCTGAAGAAGAGCTTCAGGGGCATCCTGACAGGTCCTCCTCCACTCCTTCCTGACCCACTATATGACAGCATCCAGGAGGATCCTGTGGTCCCTCTACCTGACCATATATATGATGAACCTGAGGGTGTGGCTGCCCTCTCCCTCTACGAGAGATCACAGAAGCCCTCAGGGGAGACATGGAGGGAGCAGGCCACTGCTGATGGGGGTACCAACTCCCTCCAGCAAGACTCCTCTGTGTCTGGCTGGCCACAGGTAACTGAGTATGACAATGTCATACTTAAAAAAGGCCCAAAGTAAGGGGATGGCCAGGAGATGGGATATGTGGCTCCCAAGGAGGTCTTTGGAAGATGTGGATGGGAAATGGGGGACTTCTGGGAGAGTCCTTTTTTGGTTACTGTCCCTTCCTGGGCCCAACGTTTGCTGTGCCTTATTTGTGTACTGTGTGAGTCACTATCGTGGAGCAGGAAGAGGGCCCTGGAGGGACCCACCCTCCTCCTACACTTTTCCACTTCCTCCCACTGCCTTGGGTCTCAAGGGAACTGGGGCCATTTCTCTTAAAGACAGAGGATTTCCGCAGATGTCCTGGCTCCTTGGTATGTACAGGCCTTCTGCCTATAGATGTTCTGACCCTTGGACAACCCTGGCTTCAGGGTAACAATAAGAGTGGCTGTTGTTCCCCCCCTGGCTTCCAGAGTTTTCTAGACATTAAACCAATTTTGAACTACTCCTTTGTGGCCTGAATGCTGTGAGGTTGGAAGAAGCTGGGGCTGACCTGCTGAATGCTTCTTCCCCTGGCTGTGATGTCTTTCCTGGGCCTATGCCAGGTCCTCAGCATCTGTCTACAGAGTCAAGGCCCCGAAGGTCTGGGTCCCTAGGAAAATGTTTATCTTGATCTGTTTTCTGTTGCTATAACTGAATACCATAGTCTAGGTATTTTATGAAGAAGAAAGATTTTATTTTCAGCTCATGGATCTTCAGGCTGGGGAGTCCACAAACACAAAGTGTGCTTCTGGTGAGGGCCTTCTTGCGTGATAGTACCACAGCGGACATGGCATGCCAAGAAGACAGTAAGCATACATGGAGAGAGGAAAGCTGTTCCCTAGATATTGCGCTAGTCCTCAAATGACTTAATTCATCTACAAAAGCAGTACCCTCATTGGCCAATCCCAAAGGCTCCACCTCCAAATCCATGAGCATATATAACTTTGGAGATTTTTGTTTTCAACATATGACACGTCCATTCAAAGCATGAAAAACCTTCAAACGTCCACTTTTTTACTTTTTACGAGGACAGAAAAATGGGAGTGGATGTGTTGATGCAGTTGATGGCAAACCTGGATTTTGAGAAAGACTTGGCCTTTAACATATTTTACATTTATTTACTTCTTCTGTGTGGGCAGGCAGGTGGGGCTTGTGCCACTTTTCTCGAGGAGGATGAAGGACAACTTGCCGGAGTCAGCTCTCTCCTTCTCATGAGCCCCAAGGTCTGTGTGACTTTTATGCACTAAAAATAAGACTTACAGGCTGGAGAGATGACTCAGCGGTTAAGAACACTGACTGCTCTTCCAGAGGTTCTGAGTTCAAATTCCAGCAACCATGTGGTGGCTCACAACCATTTGTAATGAGATCTGATGCCTGTTTCGGGTATGTCTGAAGACAGCAACAGTGTACTTATAATAAAAAAATAGATAAGTAAATAAATAAATCTTTAAAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000013922:ENSRNOT00000018725:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.696
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(58.0=95.1)
A:
NA
C2:
PF0217412=IRS=PD(40.0=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCCTATACTCTCCGGACCG
R:
GGGATGGAGAAGGCAGAGAGT
Band lengths:
354-840
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]