MmuINT0052588 @ mm9
Intron Retention
Gene
ENSMUSG00000022102 | Dok2
Description
docking protein 2 [Source:MGI Symbol;Acc:MGI:1332623]
Coordinates
chr14:71176623-71178301:+
Coord C1 exon
chr14:71176623-71176804
Coord A exon
chr14:71176805-71177265
Coord C2 exon
chr14:71177266-71178301
Length
461 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
3' ss Seq
CTTTTCCCCCCTCACTGTAGGCA
3' ss Score
10.62
Exon sequences
Seq C1 exon
GGCTCTGCAAGGAATATATGGTGACCATACGACCCACAGAAGCCAGTGAGCGCTGCCGGCTCCGAGGGTCCTATACTCTCCGGACCGGGGTGAGTGCCCTGGAGCTGTGGGGTGGCCCTGAGCCAGGCACACAGCTATATGACTGGCCCTACAGGTTTCTTCGACGCTTTGGGCGTGACAAG
Seq A exon
GTGAGTGAGTGAAGGGCTGAGACCAAAGATGAGTTACCTAAGGAGAACAACGAGGGAGGGGCAGAGAGCCAATAAAGAGAGAGTGGATCGAGGAGGAAGGTCATCTAGAGAGACAGCAGAGGTGGGAGGGGAAGGAGTGAAAGCCAAGAGGCCTAGGTGAGGAGAGATGATGTGGAGAAGGGATGGGGAGGAGCGTGTTCTTGCCAGATGTGGTGGCACACAGCTATAATGTCAGCACTGAGGGGGCTGAGGCAGGAGACAGAGTTGAAGGCCTGCCTGGGCTACATGGTGAGAGCCTTTTCCCAAGTAAACAACCAACCCCAACAAACAAAATGCAGAGGCAGAGGGGCAAGAGCTCCAAGAGCTCCAAGAGAAGTTTCTGGTGCCAGGGTCAGCACTTTTCCATGTGGGTGGAGTCCAGGGAAGAACAGTTCTTTCCCTCTTTTCCCCCCTCACTGTAG
Seq C2 exon
GCAACTTTTTCCTTTGAGGCTGGCAGACGCTGTCTCTCTGGAGAGGGCAACTTTGAGTTCGAAACACGACACGGCAATGAGATCTTCCAAGCCTTAGAAAAGGTCATTGCTGTCCAGAAGAATGCCACCCCTTCCGGGCCTCCATCCCTGCCAGCCACAGGGCCCATGATGCCCACTGTGCTGCCTCGACCTGAAAGCCCCTATTCCCGGCCCCACGACTCTCTGCCTTCTCCATCCCCTGGCACACTGGTGCCTGGCATGAGGCCAGGGGCCCCTGAGGGGGAGTATGCCGTACCCTTTGATACGGTGGCTCACTCCCTGAGGAAGAGCTTCAGGGGCCTCCTGACGGGCCCCCCTCCACACCTTCCCGACCCACTGTATGACAGCATTCAGGAGGATCCTGGGGCCCCTCTACCTGACCATATATATGATGAGCCTGAGGGTGTGGCTGCCCTGTCCCTCTATGACAGGACACAGAGGCCCTCAGGGGAGACATGGAGGGAGCAGGCCACTGCCGATGGGGGTCCCAGCTCCCTCCAGCAAGACTCCTCTGTGCCTGACTGGCCACAGGCAACTGAGTATGACAATGTCATACTTAAAAAAGGCCCAAAGTAGGGGATGGCCAGAAGATGGGATATGTGGTTCCCAGGGAGGTCTTCGGAAGCTGTGGAGGGGAAATGGTGGCTTCTGGTAGAGTCCTTTTGGTTACTGCCCCTTCCTGGGCCCCAGGCTCGGTGTGCCTTATTTGTGTACTGTGTGAGTCACTAGCCTGGAGCAGAAAGAGGGCCCTGGAGGGACCCACCCTCCTCCTACACTTTTCCACTTCCTCCCACTGCCTTGGGTCTAAAGGGAACTGGGGCCATTTCTCTTAAGAGACAAAGGGTTTCCACAGATGTCCTGGCTCCTCGGTGTGGGCAGGCCTCCTGCCTATAGATGTTTTGTTCCTGGGACAACCCTGGCTTCTGGTTAGCAGCGAGAGTAGCTGTTGTCCCTCTAGCTCCCAGAGTTTTCTATACATTAAACCAATTTCGAACTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000022102-Dok2:NM_010071:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.789
Domain overlap (PFAM):
C1:
PF0217412=IRS=PU(58.0=95.1)
A:
NA
C2:
PF0217412=IRS=PD(40.0=19.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACAGGTTTCTTCGACGC
R:
GTGAGCCACCGTATCAAAGGG
Band lengths:
351-812
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: