BtaINT0056583 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112836486-112838441:+
Coord C1 exon
chr5:112836486-112836657
Coord A exon
chr5:112836658-112838363
Coord C2 exon
chr5:112838364-112838441
Length
1706 bp
Sequences
Splice sites
5' ss Seq
CTAGTAAGT
5' ss Score
8.78
3' ss Seq
ATCTCTCTGTTCTGCTCTAGATG
3' ss Score
10.78
Exon sequences
Seq C1 exon
GCGGAATACTACCACCTGCTAGCTGAGAAGATCTATAAGATTCAGAAGGAACTAGAAGAAAAGCGAAGGACTAGACTACAGAAACAGAACATGCTACCAAGTGCTGCAAGCATGGTGCCAGTTATGAACACAGGGCCTAACATGGGGCAGCCACAACCAGGAATGACTTCTA
Seq A exon
GTAAGTGCTTTTTATGTATTTTTAGGAGAAACTGAAATAAAATGGTTTCTAACCAAATTCACTAATTTGCATTAGCTTATGTTACTATTCTGGAGCTTTCAAATGACTATTGCCTTTTCAAAGAACTTAGTTTGTTCTCTAGTAAAAACAGTAAACAGTGTATTGAAGATTCCTAGATTTGCTACTTGTCTTAACAATATGGCATCATTTTTAGTGCCAAAGGTATTCTTCTCTCATAGTGACACCTAGGAACTGATAGCCCATGGGTTTTTACTGACTTGCATGTGGCAGGCAGCCAGTTGATGTAGACTCAGCAGGCAAGCACCTTATTGGCTTCGATACATCCTAAACAGTATCAGATTACTTACCTTGTCACACTTTCTTCTTGACCCAGTATGTTCATAGCCTAAGAACTGTTTAAATGATGTGTGAACGGCTGTGATGGGGAAAACCTGTGTTTTTTTTAAGTCAGGAAAAGCTGGCTACCTGTAAGTATGCCAACTGAGCCAGCAGGTACCAACCTTTAGGCCACTGGTGGATGGTGAGTGGGCTGAGAAATTGACACCCCACAGGTCTTGAAGTAGTCAGGTGGAGAGCTTTCAGCAGCCTCATGTGTTAACTGTGGTGTGCTGGATACATTTTCTCATTGGACCATGATGGTGAAAAGAATTGAGAACAGCATTTCTGGCAGAGAGAACAGCATGCACGGAGGCCCCACTAGCAAGGGAAAATTGCAGGTGTGTGGGTTTGGGTTGGTTTTTTTGTTTTGGTTTTTTTTTTTGAGTAGGTAGAACAATTGTTTGGAAACAAAGTCAAGATTGGGTTGAGGATACTGCTTCAGTGCTGATAGTTTGAATTAGAGCAGTACCTATGATATAGAGACAAGTGGATAAGTTTGAGATATTTGAGTGTGCTACAATTTACTTGACTTCTTCAGAAATTGGAGCCAAGTTTAAAGTTTGTCAGGTATTAAATTGTAGTCTGTATTTTAAAATACAAACAATGGTTCTAGTGTAGGCAGGAACAAATACTAGTGGAACTGAGTAGCCCTAAGTGCGTGTTTATGGAATGAAATCCCTCTTATCCCATACACAGAAATCAATTGTAGAAGAATCCAAAATTTTGTTTTTAACCATAAACATAACTAATGAGCAAACCAGGGGAACCAAGCGAACCACCTTTCATAAAAAAGGTGATTTTAGACCATATAGATTTTAATCATTCTTAATTATTTCTATTTTTGTATTTAAGAGGTACATGATATATAGTTCAATATAATATGTATATTATTTAAAGTCAGTGTTCACAGTGGACATGTATACATCAAAACACATTATTGGGGGTACACAATCAAAATCGGTCACTGGACAAAATCTGTGGCTCTTGTCTATAGAGAGATTCTTTTTACCAGTGAAATAATCAGGCTTAATCAAATGACAGCATATTAAATACTATATTCGTCTTTTTAAATATAAGATCTCACATTATTTCCTGTCAACAGCAAAAGCACCCTGGTTCATATAGAAATGGACTAAAACCATTTTGAGGTATTTTCTTGTACTGCAGAAAAGCATTTTCTTCAGATTCCTCTCTGGTTCAAACCTTTATTCTTTTGATAGACTGAATTCTGTAAGTTACTACTCTTATTTAAATGGGAACAGCTGGCTGAAAGGTGCGTTTCTAACCATCTCTCTGTTCTGCTCTAG
Seq C2 exon
ATGGCCCTCTCCCTGATCCATCTATGATCCGCGGCAGTGTGCCAAACCAGATGATGCCTCGGGTAACTCCACAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198:ENSBTAT00000021556:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.724 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.8)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGGAATACTACCACCTGCTA
R:
CTGTGGAGTTACCCGAGGCAT
Band lengths:
246-1952
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]