MmuINT0057759 @ mm10
Intron Retention
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81621062-81623525:+
Coord C1 exon
chr15:81621062-81621236
Coord A exon
chr15:81621237-81623447
Coord C2 exon
chr15:81623448-81623525
Length
2211 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
ATTTGTGTTTTCCACTCCAGATG
3' ss Score
10.69
Exon sequences
Seq C1 exon
GCGGAATACTATCACCTCCTAGCCGAGAAGATCTATAAGATCCAGAAGGAACTAGAAGAGAAACGAAGGACTAGACTACAGAAACAGAACATGCTACCGAATGCTCCTGGCATGGGTCCAGTTCCTATGAATACTGGGTCGAACATGGGGCAGCAACCAACAGGAATGACTACCA
Seq A exon
GTAAGTACTTTTTATTATATGTAGTATAAGAAAATAATATATCCACTTTTAAAAACGAGTGGAAAAATAGAACATTTATGAATATGATAATTGGAATAATTTGATAACCTACAATTATTTTTACTCCTCAAGGGAGCCTTCCAAGTAGAAAATAGCAGCTTCCATATTTCCATTGGCTTTCTCTAGCATCTACTGTCTTATATTTGACAGGTAGCCAGTAGGTTTTGGTATACCAACCATCTTCAGGGCTCAATGGAAATTTGCTAATTGCATTTTATTATCCAGGGGTTTTTGTTGTTTTGTTTTGTTTCTTTGGTTGATAGTTTACTTTGGTTTTTGTTTTGTTTTTAGTTTTTTTGAGACAGGGTGTCTTAAGTGTTCTTTTGCTATAAGAGATACTATGACCTGGGCTAGAGAGATGGCTCAGTGGTTAGGAGCACTGACTGCCCTTCCAGAAGTCCTGAGTTCAATTCCCAGCATCTACATGGTGGCTCACAGCCATCCGTAATGGGATCCGATGCCCTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTGCTCATGTAAATGAAATGAATAAATCTTAAAAAAAAAAAAAGGAAAAGAAAAAAAAGAGATACTAAGACCAAGACCAAGAAAACTCTTATAAAAGAAAGCACATAACTGGGCAGATGCTTACAGTTTTAGAGGATTAATTAGCCCGTGATCCTAGTGGGAACTAAACATTTGTAGTACGGGATCAGGGGTTGAGAGCTTTACATTCTGATCCACAGAGGGAGAAAGATAGACAGACAGAAAGAGACTGGGTGTAACTGTGCTTTTGAATCCTCAAAGCTCGTGACATACCCTCTTCAAGGACTATGCTCATTCCATAAAGGCAATACTTCCTATTCCTTCCCAAATAGCTCCACTCACTAGAAGCCAAAGCATTCAAATATGAGCCTATTGGGGCTGTTTTAGGGGTCTCACTATGTAGAGCAGGCTGCCCTTGAGCTCACAGAGTTTTGCTTGCCTCTGCCTCCCAAGTGCTGGGATAAAGGTGTGTACCACCATACCTAGCCATATACTTTAGTATAAACAGCTTCACATTACAGTAACATTTTACTGTATATTCCAAGGCTAAAGACAGTTCAAAAGGTATCATTTCATAATATGTATTAACTTACATTTCTGATTTAACACCATTCTTGACCTTAAGTAATTATATGTGTGTATATATATATATATATATGTATATATATATACACACACACACACACATATATATACACATACATACATATATATGTGACTTATCAATTATTTAATTCATTTATTGACATACTTTTAGATTTCTATGTACTAAAATACAGAGTAAGAAGTAGTTGGGAAGATTAGCAGAAGGTGCTTAAGGTATGTGATATCAGTATCTGTTGTGTTGAGTAAACCAACAGGGCAAGCAAGTGTGAATCTTAGCAGCTGTCTAGAGGAGGATGGAACAGAGGATGAAATGAAACTATGTCTTTTTCAATGGAGGTCAGCAACAAAAACATGGCCAAAGTGCAGAGAAAGAACTCCAGCAAATAAGTGAAAAAAATCCAAAGTACTGGGGAAAGTGTGCTTTAGGCTTAAGTTTTTGGCTGGTAACAGAAGGAAAACTCTTGAAGTAGAAAAAGCTGCAGGCTGTATAATGGAAGGTCTGCAATCAGCTCTGGTTTGTTTGTTTCTTTGAACTGGTTCTCAAATTGGACTTGAACTCACAGTAATCCTTCTTTTAGCTTCCTAAGTGCTTGGTCCACCTTACCCAGAACAATAGAAACCGCTGATGGTGGTTCACTTGAACACACCACACAGACGTTGGAGGGCAATTTGCAATAGTCACTTCTCTACTTTTGCCTTGTGGGTCCTGGGTATCAGACTCAGGTTGTCTGATTCAAAAGAAAGCACCTTTATTCACAGACCTGTCTTAGTGGACTAGCACTCTACTCTGTGTACCTGGTTGAAAGTGTTTAACTAGGAGATGTAGAGATAATCTAACAAGATATCACACTTAAATGTTTTAATCTCATCTTAAGTTTTATATTTAAGAAGCATAAAATGGTCTAGTATAATATGGAGTCCATTTCTTGAGATTCTTGTCCAGTTAGAGATTGTTTAAGCTATTAATGCTTGATGTAATTTTGTTGTTTTTAAGAAACAAAAGTATATTTAACTATTTGTGTTTTCCACTCCAG
Seq C2 exon
ATGGTCCTGTACCTGACCCGTCTATGATCCGTGGCAGTGTGCCGAACCACATGATGCCTCGGATGACTCCACAGCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024:ENSMUST00000068387:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(29.0=33.9),PF068866=TPX2=PD(84.2=54.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types