DreINT0063356 @ danRer10
Intron Retention
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24900237-24901465:-
Coord C1 exon
chr3:24901378-24901465
Coord A exon
chr3:24900315-24901377
Coord C2 exon
chr3:24900237-24900314
Length
1063 bp
Sequences
Splice sites
5' ss Seq
AGGGTACGA
5' ss Score
7.38
3' ss Seq
GATCTTCTGGTCTTTCCTAGATG
3' ss Score
9.56
Exon sequences
Seq C1 exon
GCGGAGTATTACCACTTGTTGGCGGAGAAGATATATAAGATTCAGAAGGAGCTGGAGGAGAAGAGGAGAACCAGACTCCAAAAGCAGG
Seq A exon
GTACGATGCCAGCGCAATCTGGCATGCCCAACAGTGCTCTACCTTAAGCACCAGCTGGCATGAATCGGGCACAGCCGCCCAGTTCGTGCACGTACACATCTGCATATATCCATTTGTCGGCCCGCAGTCAAATTTAAAGCTTGATGTATTGCTCTGAAATACAATCAGATTTAATCAAAATAACCCCGCCCCCCATGCTTCACTTGGCTGTGCACCAGTTTAGGGAAGAAAACACATTCACAGTTTCCTTTTCATGCAGAATTTAATTTAATTATTTAAAAAATAAGTATTATTTTTATTTAGAGATCTATCCATGTAAGAAGTTTGCTAAAAACAAAATTGTTCTAATGGTTGCATTATAAATTTTTATACGTTTGTAGTTTTTAAAACATTTGCATTTCAACAATTAATTCAAGTGTTAATAAAAAGCATAACCATTAGGATTTTATACTAAATTGGGTCACACGTTATGGAAAGACACTATTTCTGCTCTTAATAAGCAATTAATCAAAACTTTTATCTAAATAAACAACTAGTTAACTACTAAACAACTACTTATAATTACCGATTCTTGATCATTAGTAAGGTAGTAGCTGTGTTTGGGTAGGATTAGGGATGTAGAATAAGATCATACTTTATAAGTGCTAATAAACAGCCACTATCTTAATGATAAGCCAGCAGTTAACAGTAGCGATTGGTATTTAAACTGAAGTGTTACCTTAAATTATGAAATAGAAACAGGAAAGAAATGTTTGAACTCTGTTCCTTTCACATTCACAGAAAGATGTTTGAATCTATTCTTTCAAAAAGTAAACCCAACTGTGGATACCTAAATTTTGACACAATGTAAATACATTTAAACATCTCAACAAATTACTCCACCCACACATGTATAATTTCCAAATATAGCTGTACATTCCATTTAATAAACTCTCTTATGTTGCATAAAATAATACAATGCTAGCTTTTATTTCCAGTATAGTTAAATCACAGTTAAACTTGAGGCTGTTGTTTGTTATTGATCATGTGGAGTGATTATAAAGGATCTTCTGGTCTTTCCTAG
Seq C2 exon
ATGGTCCTCATTCAGATCCGTCTTTAGTTCAAGCCACTGGTCCCAGTCAGATGGTCAATCGCATGCAGAATCCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108:ENSDART00000156459:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=63.3)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]