GgaINT0114269 @ galGal3
Intron Retention
Gene
ENSGALG00000011992 | EP300
Description
NA
Coordinates
chr1:51691317-51692747:-
Coord C1 exon
chr1:51692573-51692747
Coord A exon
chr1:51691395-51692572
Coord C2 exon
chr1:51691317-51691394
Length
1178 bp
Sequences
Splice sites
5' ss Seq
CAAGTAAGA
5' ss Score
7.61
3' ss Seq
TCCAGTATCTTTTTTTACAGATG
3' ss Score
8.11
Exon sequences
Seq C1 exon
GCAGAGTATTATCACTTGCTAGCTGAGAAGATCTATAAGATTCAGAAGGAGCTGGAGGAAAAGCGAAGAACCAGGCTGCAGAAGCAAAACATGATACCAAGTGCTCCAGGCATGCCACAGGCTCCTGTGAATCAAGGGCCCAACATGGGACAGCCTCAGCCAGGGATGTCTGCAA
Seq A exon
GTAAGAACAGTTGGGTTAGTTATTGCTTGGTACGGGTCAAGAATATAGTGTTTTTCTGGTGTGCATTTTGGTGAGCATTTTGACAGTGTTGTTTCATTGGTACACTCCTAATGCTAAACAGATTATTATTATTATTATTATTATGTTCCCTTATAATTAGGCATTTGCATATTAGAGTAAAAGTGACTTTGGAAAGGAGCTAATGATCAAAATTGTAATGCTACTGAAGACTTATCTGTTCACAGCATTAGGAAGTTATGAAGTTATGAAACAGTAGGCTTTGCCAGGTAACAGGTGAAAACAAGTAACACTAATTCTTGCACTTGATATTTCTCCTCCATTCATTCATTCATTCATTCATTCCTGCATGTTTTTAGGTACTTCACAGTTAAGAACTAAGTTCTGAAGACATCTAATTAGGATAGATGTATAGCTATCAATGACACTATGATAAATTGTCTTAAGAACTTGGAGTCAAAATCAGAATTAGTCAGTTGAAGAGGCAAGAATCTTGGGTTATTTTTCTTATGCTGCATGATGATCCGGTAGTTCCAGTGTTATGCTACAAGAAGCTTAATCTGAGGAGTTTTTCTCCTTCTTGAATATGAATGTATCTTGGTAATTCTTAGAACTGGGTTTACTAAGGTGCATTACTAAAAATCAGGAAAGGCCTTTAAGATTGGTACTATGAATTTATTTGCTGTAACTTCCTCTAGATGATAGACTTTCAGGAGTAGATGTGATATTTTGGTTGTTTATCCCATATGCTAGAATTGCCAAACTTTAAAGGTTTGATAAAGTAATTCAAACCATCCCATTTTTATAGTATTTTCAATCAGGAAGTGCAGTAACAGTGTAGAGTGGTTTGTAGAAATTCTTGTGGTCTGGAATGTTCACAAGCTTCTGAGTCTGTCATTGTACCTCAATAACATATTTCGTATTTGTCCACGTTTCTAAAATCTGGCTGTAAGTCAGAATGTTTTTAGTCAATTGGATATCAATTGGGCTTCGCTTCATACTTGAGGGACTCTTAAGTATGCTTAGAATTACTGGACAGTGTCCATGCATTTTTTACTTTTTTTCACAGGAGGATTTTTGTTTTCACTAGAATGTTTTCTCGATTAAAAACCTGGTGGTTTCTAAATGCCATAATCTTATTCCAGTATCTTTTTTTACAG
Seq C2 exon
ATGGTCCTATAACTGACCCAACACTGATACGTGCGAATGTGCCAAACCAGATGATGAATCGCATGCAGGCACAGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992:ENSGALT00000019563:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.746 A=NA C2=1.000
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAGTATTATCACTTGCTAGCTGA
R:
TGCCTGCATGCGATTCATCAT
Band lengths:
246-1424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]