RnoINT0006535 @ rn6
Intron Retention
Gene
ENSRNOG00000000190 | AABR07058539.1
Description
NA
Coordinates
chr7:122858240-122861296:+
Coord C1 exon
chr7:122858240-122858414
Coord A exon
chr7:122858415-122860967
Coord C2 exon
chr7:122860968-122861296
Length
2553 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TATTTCTGTTTCCACTCCAGATG
3' ss Score
10.1
Exon sequences
Seq C1 exon
GCGGAATATTACCACCTCTTAGCTGAGAAGATCTATAAGATCCAGAAAGAACTAGAAGAGAAACGAAGGACTAGACTACAGAAACAAAACATGCTACCAAGTGCTCCTGGCATGGTTCCAGTGCCTATGAATACTGCACCTAACATGGGACAGCAACCAACAGGAATGACTACCA
Seq A exon
GTAAGTACTTTTCATTATGCATAATTTGAAGAAGATAATACATCTACTTTTAAAACTAATGGGAATGGGTTCAGTCCCCAGCTCCGAAAAAAAGAACAAAAAAAAAAAAAAACTAATGGGAAAATAAAAACATTTCAGAATATGATAATTGGCATAAATTGATAATCTATAATTATTTTTACTCGCGAGCCTTCCAGGTAGAAAAAATAGGAGCTCACGTGTTTCCATTGGCTTTCTGTAGCCTTCGTTGTCTCGCATTAGACAGTTGCAGTAGGTTTTGGTATGCCAACCATCTTCAGGGCTCACTGGACACTGGACTCATTGTTATTCAGGGGATTGTTTTTGCTTTTGTTTTTGTTTTCTTGTTATTTTGTTTGATTGGTTGGTGGATGGGTTGGTTTTGATTTTTATTTTGTTCTTAGTTTTTTTGAGACAGGGTGTCTTAGTGTTCTCTTGCTATAAAGAGATACCATGACTAAGACTAAGAAAACTCTTATAACTGGGGACATGCTTACAGTTTTAGATGATTAGTCCGTGACCCTAGTGGATCCAAAGAGAGAGAGACAGACAGGAACTGGGTATAGCTGTGCTTTTTTTTTTTTTTTTTTTTTTTGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTCCAAGGTAAGCGCTCTACCACTGAGCTAAATCCCCAGCCCCATAGCTGTGCTTTGAAACCTCAAAGCTAGTGGTACCTTCTTCAAGGATGTATGCTCATTCCACAAAGGCCATACCTCCTACTCCTTCCCCAAGTAATTCCACTCAGTGGAAACCAAAGCATTCAAATATGAACGTATTGGTACTGTTTTCATTCAGACCACTACACAGGGTCTCATCGTATAGAGCAGGTTAGCCTTGAGCTTATAGACTTGTTTGCCTCTGCCTCCCAAGGGCTGGGACTAAAGGTGTGGACCACCGTACCTAGCTATGTACTTCAATATAAACAGCTTCATGTTACAATAACATTTTACTGTATATTCCAAGGCTAAAGAAGAATCATTTGGTAATGGTATCATTTCATGGGGCTGGGGATTTAGCTCAGTGGTAGAGCGCTTATCTAGGAAGCGCAAGGCCCTGGGTTCAGTCCCCAGCTCCGAAAAAAGAACCAAAAAAAAAAAAGGTATCATTTCATAACATGTATTAACTTCCATTTCTGACTTAACACTATTACTTGACCTGTTAATTTATACATATATATCTAAGACTGTTATGAATTAATTTTTTCTTGATGTACTTCTAGATTCCAAGTGGTAAAATACGGAATAAGAAGTAGTTGAAGAGTAGCACAAGGAGCTTAAGTTATGTGATATCAGTGTCTGTTGTGTTGAAAAGAACAGGGCAAGCAAGTGGGACTCTTAGCAGCTGTCTAGAGGAAGCTGGAAGAGGAGGAAAGGAAGCCTGGCCTTTTTCAGTGGGGGTCAGCAAGCAAAGACATGGTGAGGTGCAGAGAAAGACTTCAGCAAATAAGTGCCCTGGGAAAGCATGCTTTAGGCTTAAGTTCTTGGCTAGTAAACAGAAGGAAAACTCTTGCAGTAGAAAAGCTATCAGGCGGGGTTGGGGATTTAGCTCAGTGGTAGAGCATTTGCCTAGCAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAGGGGGGAAAAAAAAATCATTCACTGAAAAGCTATCAGGCTCTGTGTAATGGAAGGTCTGCAAGCAGCTCTCGTTTGTTTGTTTATTTGTTTGCTTGTGACTGGCTCTCAAACTGGACTTGAACTCAAAATAATCCTTCTTTTAGCTTTCTATGTGCTTGGTTAGAAATTTAAGTCCATCTTATCCAGAACAATAGAAACTCGTGATGGTGGTTTCCTTGAACACACCACACAGAGGTCAGAGGAGTTTGTAATAGTCACTTCTCTTCTACTGCCCCTTGGATCCTGGGTGTCATTCTAAGGTTGAATGGTTCAAAAGCAAGTACCTTTATTCACAGACCTGTCTTACTGGCCCAGCCCTCTATTCTATGTACCTTGTTGAAAGTGTTTAACTAGGGGCTGAAGAGATGGTTCAGCAGTTAAGACTAGAGAGGTCTTGAGTTCAATTCCCAGCAACCAGATGGTGGCTCACAATCATCTGTAATGGGATCTGATGCTTCTTCTGGTGTGTCTGAAGACAGCAACAGTGTACCCACATACTGAAATAAATCTTTTTTTAAAAAAGTGTTTAACTAGAAGATGTGTAGATGAATCTAACAAGATACCAAAGTTATATGTTTAATTCTCACTTTAAGTTTTATGTTTAAGAAGCATAAAACGGGCGCCAGTCCTTCCGAGCTGACTGAGACGCCCGCAGGTACCTGTGTATCTTGTATACAATAAACCCTCTTGCTGATTGCAAAAAAAAAAAAAAAGCATAAAATGGTCCAGTATAATATAGAGACCAGTTCTTGAGATTTTTGTCTAGTTAAGAGATTGTTTAAATTTTTAATAATGCTTGATGTAATTTTTTTTTTTTTAAGAAACAAAAGGATATTTAACTATTTCTGTTTCCACTCCAG
Seq C2 exon
ATGGTCCTCTACCTGATCCATCTATGATCCGTGGCAGTGTGCCAAACCAGATGATGCCTCGGATGACACCACAACCTGGTAAATTTTGGAAAAAAAAAAAAAGTACACGGTTAATTTTTAAGATCCTCTGAAGTAGAACAAAAGGACACTTGCTACCTTAATTTCTGATTTAATCCAGCAGCAAGTCTCGTAATTTTCTGCCTTTGGAAATTTGAAAGTTCGTTGTAGTAGAAATCCACCAAAAGAGGGGAGTGAGAAATTAGGTTATCTGACAGGTCCAGGAGTAGAACCAAGTAAGCAAGCAGTCATCTATTTAAAAACAACTAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000190:ENSRNOT00000000206:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.712 A=NA C2=0.698
Domain overlap (PFAM):
C1:
PF0217211=KIX=PD(23.5=32.2)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]