BtaINT0056607 @ bosTau6
Intron Retention
Gene
ENSBTAG00000016198 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr5:112829749-112830975:+
Coord C1 exon
chr5:112829749-112829862
Coord A exon
chr5:112829863-112830729
Coord C2 exon
chr5:112830730-112830975
Length
867 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
CTTTCTTCTGTTTTCCCTAGCAA
3' ss Score
10.22
Exon sequences
Seq C1 exon
TGGCACACTGTGCATCTTCTCGACAAATCATTTCCCACTGGAAGAATTGTACAAGGCATGATTGTCCTGTGTGTCTCCCCCTGAAAAACGCTGGAGATAAGAGAAATCAACAGT
Seq A exon
GTAAGTGATGAAATCTTTTGAAACTTTTATATCAAAGTATTCTTAGACTCTTCCCCGGTGCAATTTGGTGAGATTTAACATACTTCTTGATTATATGAAGTTCCTGTGACTGCCAGTGCTGTCATACTAGATTATTTCCACTTACCACAAACTTCATAATAATAAGGTTAGAACTGAAGTGTTTATTACTTAAAATAAGATCCAGAAAGATCATTGCTTTGACATTGGGCAGATTATTACTCTTCTCTACCTGTGATGTAAATATTTAGATAATTTGAAATTAATGTTAAAGAAAAGTTTGAGGTTATTTTTAGAAGCCTGGGGTTGATGAGCTTTTCTTAGAGAAAAAGTATCAAAAGTAGAAAGTGCAGCCACCAAGTCTCATTTAGGATTTAAAATTGAAAGGTGGCATTTAGGATTGAAAGATAAATTTGGAACTGCATATAGCATATTTTTAAAAGGAATGAAATTCCATAAATGAGTAAATAAATCATAGATATCCTAGTAGAGAATTAGGACTAGGAAATAGTTCACCAGGAGGAGGAAATACCCAAAAGTTCCCTATTAAATTAAGTAATGAAATAAAATACCATTTCTCTCCTGTCACGCTGTCATGCATTCTTCATGGGAACATTGATAACAGCTTGTGGGAAGGCTTTTGGGTATTTTGGATCAAAAGTTTTTCATGCCAGTGATGCCCTTTGACCAATCAGTTCTATGCTTAGAAATTTAAGGAAATAATGGGAAACAAGATGCATGTATTTCATAATCACACAACAGTATTTTTGTGTTTAAAACTCAGACATGATAGTATTTCCTGTCTCAGCATCTTTAATGTTGTAATACTCTTTCTTCTGTTTTCCCTAG
Seq C2 exon
CAATTTTGACTGGAGCACCAGTTGGACTTGGCAGTACTAGCTCTCTAGGGGTGGGTCAACAGTCCACTCCCAGCCTAAGCACTGTCAGTCAGATTGATCCCAGCTCTATAGAAAGAGCCTATGCAGCCCTTGGACTGCCCTATCAAGTAAATCAGATGCCGACCCAGCCCCAGGTGCAAGCGAAGAATCAGCAGAACCAGCAGTCTGGGCAGTCTCCCCAAGGGATGCGGCCCATGAGCAACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016198:ENSBTAT00000021556:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.735
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACACTGTGCATCTTCTCGACA
R:
GTTGCTCATGGGCCGCATC
Band lengths:
353-1220
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]