GgaINT0114264 @ galGal4
Intron Retention
Gene
ENSGALG00000011992 | EP300
Description
E1A binding protein p300 [Source:HGNC Symbol;Acc:HGNC:3373]
Coordinates
chr1:49668195-49669358:-
Coord C1 exon
chr1:49669245-49669358
Coord A exon
chr1:49668432-49669244
Coord C2 exon
chr1:49668195-49668431
Length
813 bp
Sequences
Splice sites
5' ss Seq
AATGTAAGT
5' ss Score
8.62
3' ss Seq
CTTTGGTGCATCTCTTCTAGCGC
3' ss Score
7.86
Exon sequences
Seq C1 exon
TGGCACATTGTGCATCTTCTCGACAAATCATCTCGCACTGGAAGAACTGTACAAGACATGACTGTCCTGTATGTTTGCCACTCAAAAATGCTGGGGACAAAAGAAACCAGCAAT
Seq A exon
GTAAGTCTGCTAGGAAGCTCTGTGTGTTGGATAAACCGTAAAATGCATGTTGGGAGTTGCTTGTACCCTGGTGATGATCCTCTTTGACCTGGGAATACACAATGTAATTGTCATCTTGCTTTGAAGTGGCAGAATATTCTGCTGCTGCTGATAGCTAGTTTTTGTGGAAGCTTTCTAACTTTTCTAGCAGGAGAGTGGTAAGGGTGAACGAGAACTGTAGTGTTCTTAACCAGTTGATGTGCTTTTCTCTACCACCTGTTGGAGCTGATGATCTCCTGCAGATAAGCATGCACATAGAGAGGGTTGTGCCATTTCAGCTTTGTTCTGTCTTCCTCTGTTTTCCTTTTCCCTCTTCCCCTTTCTGACTCCTTGGTCTTCCTGCCAAAATTTGCAAGATATCTTGTATCCTGTATCCTCATGGTTCTTAATGTTATTTTGGGCTCTTTGCATGACATGAACTGGGATATTTCTTGTTCTAAGAAAATAACAAAGTATGGCTGTTGAAGAGCTGAACCCTTCTGCCTTTAAACTCTGTGACGTGTGCTTCTGTTCTCAATTTTGAGCAAACAATCTCCTAAATACTTAAGGATTTCTTCTCAGCAGCTCAGAAGGAAAACAATGTTACTGAAATGACTGCTTGGGTCAAAATCTATTCTCCCTTTTCACAGTGGCTTTTCCAGACCTGGCATCTTACTTGCGTAGTCCTAGATGGGGACGTTTTGGTTCTGAACAACCAGCAGTCTCCTCCCTCTTTTTGTAGACCTCTTTGACTACCTCCCGCTGTCCTTACTAACTTTGGTGCATCTCTTCTAG
Seq C2 exon
CGCTACTGGGTGGAGCTGCAGTAGGACTTGCAAACACCGGCTCCGTGGGTGTGGGGCAGCAGACTACGCCCAGCATAAGCACTACCAGCCAGATAGACCCCAGCTCCATCGAGAGAGCCTATGCAGCCCTTGGACTAACCTATCAAGGGAACCAGATGCAGACACAGTCTCAGGCTCAAGTGAAGAATCAGCAGCAAGGACAGTCACCCCAGGGTCTGCGCCCAATGAATCCTATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011992:ENSGALT00000019563:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.128 A=NA C2=0.700
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTGTGCATCTTCTCGACA
R:
TAGGATTCATTGGGCGCAGAC
Band lengths:
345-1158
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]