RnoINT0006539 @ rn6
Intron Retention
Gene
ENSRNOG00000000190 | AABR07058539.1
Description
NA
Coordinates
chr7:122847495-122849493:+
Coord C1 exon
chr7:122847495-122847608
Coord A exon
chr7:122847609-122849247
Coord C2 exon
chr7:122849248-122849493
Length
1639 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
TTTTTTCTTGTCTTTTCTAGCAA
3' ss Score
11.2
Exon sequences
Seq C1 exon
TGGCACATTGTGCGTCTTCTCGACAAATCATTTCACACTGGAAAAATTGCACAAGGCATGATTGTCCTGTGTGTCTTCCTCTCAAAAATGCTGGGGATAAGCGAAATCAACAGT
Seq A exon
GTAAGTGATTAAATCTTGCTGGTTTTTACCCAAGTATTTTGAGCAGCCCACTAATGCCCTTTGACAGAGTATAGACGACTGCTTGATTTTTTTGAGACTCTGGTCCTGCCATGTCATTCTGAATGAAAGGTTTTCTATTTCTCTCTTAACTAGTAAAACAAAAAAAATAAGTATTCCTCATTTTTGGGCTGGAGAGAACGGCTCAGCGGTTAAGAGCACTGACTGCTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGGAATCCGATGCCCTCATGTGATGCATATGAAGACAGTGACAAGTGTACTCACATATGTAAAATAAATAAATCTTTAGAAAGAAAAAGAATATAACTATTCTGTTGTGGGTTTTTGGTTGTTTGTTTTTGCCTTTAGAGCATAGTCTTGCTATGTAGCCCGTCCTGGCACTGAACTTGCTATCTCTGCCTCAGCTTCCTGAGTGCTGGGATTATAGTTGTAATGAAATATAATTATAACTGTAATGGGTTTGTTTGTTTATTTGTTTTTTAAAGATTTATTTATTTTACATGAGCACACTGTTGCTGTCTTCATACACACCAGAAGAGGGCATTAGATCCCATTACAGATGGTTGTGAACCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGCAGTCAGTGCTCTTAACCGCTGAGCCATCTCTCCAGCCCTTTTTGTTTGTTTTTAATTTTCAAAACTGAAGCATTGTTGTTGTGGCATTAAGTGGGCTACTCTTACGTACTTGCAACAAGTAGGTCAAATGAGAAATGTTGGATATTAGATCAGGGTGTGGGAGGGTGTTCCTTTTTTTGGTTGTTTTCTTTTCAAAATAGATATTCTCTGTGTGACTTGTCTGCCCTGGAACTTGCTTTGTAAACCAGGCTGGCCTTGAACTGACAGATAGTGTCTGCCTCTACCTGGGACTAAAGGCTTGCACCACTATCACCTGGCTTTTTAAAAGCACGCGTGCGCGTGCGTGTGTCTGTCTGTCTGTCTGTGTGTGCATATGTTTGAGATTTGTTTTATAAAATAAATTTAAAAATTATTAAACAAAGATGAGATTTTTCTCAGAAAAGTAATAAGTAAAAATATTACCTTCACAAAGTACCCCTGCCATATTTTTTTCTTAAAAAATATTAAGTATTTAGTGTTAAGAGAGAAATTTGGAGCCGCGTATGGTGGTGGCACTCACCTTTAATCTTAGCACTAGGGAAGCAGAGGTAGGCAGATCTGACTTTGAAGCGCCAGCCTGTGTACAAAGCAAGTTCCATCACAGCTAGGGTTACTAAGGGAAACGCTGTCTCACAAAACCAAAAATTCAGAAGTGCATGTAAAGCATGGATCTAGAAAATTGTTCAAAAAACTAATTGGAGACATAGATCTATACTATTCAGACACTTTATTAAATGAGACTTTTAAAATTTTCATTTAAGGGGCTGGGGATTTAGCTCAGCGGTTAGAGCGCTTACCTAGGAAGCGCAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACCAAAAAAAAAAAATTTTTTTTCATTTAAGCATTTTAAATATTTTTTCTTGTCTTTTCTAG
Seq C2 exon
CAATTTTGACTGGAGCACCAGTCGGGCTTGGAAACCCTAGCTCTCTAGGAGTGGGACAGCAGTCCACCCCTAGCCTAAGCACTGTCAGTCAGATTGATCCCAGCTCTATAGAGCGAGCTTATGCTGCTCTCGGACTACCCTATCAAGTAAACCAGATTCCACCACAACCCCCCGTCCAAGCTAAGAATCAACAAAGTCAGCCGTCTGGACAGTCTCCCCAAGGCATGCGGTCCATGAACAACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000000190:ENSRNOT00000000206:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.807
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATTGTGCGTCTTCTCGACA
R:
TGTTGTTCATGGACCGCATGC
Band lengths:
353-1992
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]