DreINT0063379 @ danRer10
Intron Retention
Gene
ENSDARG00000061108 | ep300b
Description
E1A binding protein p300 b [Source:ZFIN;Acc:ZDB-GENE-080403-15]
Coordinates
chr3:24908787-24910021:-
Coord C1 exon
chr3:24909908-24910021
Coord A exon
chr3:24909015-24909907
Coord C2 exon
chr3:24908787-24909014
Length
893 bp
Sequences
Splice sites
5' ss Seq
AATGTGAGT
5' ss Score
7.8
3' ss Seq
ATCTCTCTATTTCTCTTTAGCTC
3' ss Score
9
Exon sequences
Seq C1 exon
TGGCTCACTGCGCGTCCTCCAGACAGATCATCTCTCATTGGAAGAACTGCACACGGCATGACTGTCCTGTCTGCCTGCCGCTAAAGAGCGCCGGAGACAAAAGAAACCAGCAAT
Seq A exon
GTGAGTTAACATGCAGAAATGTCTGGAAGCTTGTTTCTGATTAAAAAGAAAAGATGACTATGAATCTCACAATTCATGTTTTTATTATATATATATATATATATATATATATATATATATATATATATATATATATATATATACATATACATATATATACATATATATACATATATTTATATATACACACACACACACACAGTTGAAGTCAGAATTATTAGCCCCCCTGAATTATTTGCGCCCCTGTTCATTTTTTTCCCCAATTTCTGTTTAATGGAGGGAAGATAGTTTCAGCACATTTCTAATCTTAATAGTTTTAAAAACTTATTTCTAATAACTGATTTATTTTATCTTTGCCATGATGACAGTAAATAATATTTTACTTGATATTTTTCAAGACACTTCTATGCAGCTTAAAGTGACATTTAAAGGCTTAGCTAGGTTAATTAGGTGAACTACTCATGTTAGGGTAATTAGGCAAGTTATTGTATATATAACTTAATGTATAATATATATATGTATGTTTCCTCTATAGAATAAACTTCTAATCTCATATATATATATATATATGTATGTGTGTATGTATATGTATGTGTGTATGTATGTATGTATATGTGTGTATGTATGTATGTATGTATATGTGTGTGTGTGTGTGTGTGTGTATATATATATATATATTCTATAGAGGAAACAAGATTATGCTCAAGATTATCCTTATGTTTAGAGCCTGATACGTACAAAGGAAAAAATGTTTTAGCTGTTTTCATCCATAAAATAATGGTCAGTGGTGTTCCAAAGTGATCCTTGATTTAACTTTCAGTGTATGGACAAAAAGGTGTATTTAGAAAAGGGCAGCTCAATCTCTCATCCTTCATCTCTCTATTTCTCTTTAG
Seq C2 exon
CTCTATTGGGAGGTGCTGGGATGGCCATGGGTGGTCCTTTAGGTGGGTCATTACCTGGTGGCCAACCTTCAGCTCCAAACATTAACCCACCCAGTCAGATTGACCCAAGCTCCATCGAGAGGGCGTATGCTGCTCTTGGACTCACTTACCAAGGGAACCAAGCATCCAATCAAAATCAGCAGACCTCTGTACCCGGTCAACCTGGCATGAGGTCGCTCAACAACATGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061108:ENSDART00000156459:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=NA C2=0.870
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCGCGTCCTCCAGACAG
R:
CCATGTTGTTGAGCGACCTCA
Band lengths:
335-1228
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]