MmuINT0057783 @ mm9
Intron Retention
Gene
ENSMUSG00000055024 | Ep300
Description
E1A binding protein p300 [Source:MGI Symbol;Acc:MGI:1276116]
Coordinates
chr15:81441840-81443845:+
Coord C1 exon
chr15:81441840-81441953
Coord A exon
chr15:81441954-81443599
Coord C2 exon
chr15:81443600-81443845
Length
1646 bp
Sequences
Splice sites
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
3' ss Seq
TGTGTTTTTGTCTTCTCTAGCAA
3' ss Score
10.58
Exon sequences
Seq C1 exon
TGGCACATTGTGCATCTTCTCGACAAATCATTTCACACTGGAAAAATTGCACAAGGCATGATTGTCCTGTGTGTCTTCCTCTCAAAAATGCTGGGGATAAGCGAAATCAACAGT
Seq A exon
GTAAGTGATTAAATCTTGCTGATTTTTACCAAGTTTTTTGAGCAGCATACTAGTGCCCTTTGACAGAGTGTAGACTACTGCTTGACTGTTTGAGACTCTGGTCCTGCCATGCCATTCTGGATGAAAGATTTTCTATTTCTCTCTTAATTAGTAAAACAAAAAAGAAGTATGTCTTATTCTTGGAATGGAGTTAAGAGCATCAACTGCTCTTTCAGACGTCCTTAGTTCAATTCCCAGCAACCACATCATATCTGTAATGGGATCAGATACCCTCTTGTGCTGTGTATGAAGACATCGACAATGTAATCACATATGTAAAATAAGTAAATCTAAAAAAAGAAAATGGAAATAAGATTTTCGTATTCTTAAAACCATCAATAGATGACAAATTTTAAAAAAATTTTTTTTGCCTTTAGAGATAGCCTTGCTATGTAGCCCAGGCTGGCACTGAACTTGCTATCTCTGTCTCAGCTATCTGAATGCTGGGATTGTAATTGTGTACTGTCGTGTATTCTTTAAAATTTTCAAAACTGAAGCATTGAAGCAAGTTTTTTCTTTTTATTTATTTATTTATTTCAAATATATGAGTATACTGTAGCTGTATAGATGGTTGTGAGCCTTCATATGGAATTGAATTTTTAGGACCTTTGCTTGCTCTGGTCAATACTGCTCGCCCCCAGTTGCTCCGGCCCAAAGATTTATTTATTATTTTTATTTATTACTATACATAAGTACACTCTAGCTGTCTTCAGACGCACCAGAAGAGGGTGTCAGGTCTCATTACAGGTGGTTCACAGTGTGGTTGTTAGGATTTGAACTCAAGACATTCCAAAGAACAGTCATTGAGTGTTCTTACCCACTGAGCCATCTCACCAGCCTGGCATTGTTGTTTTGGCATTGAGTGGGTAGATCAAATGAGAAATGTTGGATTGGGGTTAGCGGGGGTTTCTTTTTTTGATTGTCTTCAAAATATTCTCTGTGTGACAGCCTTGTCTGTTCTGAAACTTGTTTTGTAGCTCTCCTGGCCTTGAACTGACAGACATCTTCTACCTCTGCATTCCAAGTGCTGAGACTATTGACTTGTGCCACTGTCACCTAGCCTTTTAAAACTCTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGTGTGCGTGTGCATGCACGCGTGTCTGTCTGTCTGTGTGTCAGTGTATATGTTTGAGTTTTATTTTATAAAATAAATTTAAAAATTGTTCTCATAGAAAAGTAATAAGTAAAAATACTACATTCAAAAAGTGCAGCTACCATATTTTTCTTAGAAAAAATATTAAGTATTAATTGTTAAGAGAAATTTGGAGCTATGTATCGTGGTGGCACACATCTTTAATCTCAGCACTAGGGAGGCAGAGGCAAGTGGATCTGAACTTGAAGCAAGGTCCAACTCGGCCAGCTTTACACAGAGAATCCCTCACTTGAAAAACCAAAAATTTGCATGTGCATATATAAAGCATGGATCTAGAAAGTTTTTCCAAAAATTAATTGGAGGGAAACACAGATTTCTACTACTCTGACACATCATTATAATAAGACTTTTAAAAATGTCATTTAAGCATTTTAATATTTTTTCTAACCAACTGTAGTGGTCTAATACTGTGTTTTTGTCTTCTCTAG
Seq C2 exon
CAATTTTGACTGGAGCACCAGTTGGGCTTGGAAACCCTAGCTCTCTAGGAGTGGGGCAGCAGTCCACTCCTAGCCTAAGCACTGTTAGTCAGATTGACCCCAGCTCTATAGAGCGAGCTTACGCTGCTCTTGGACTACCCTATCAAGTAAACCAGATTCCACCACAACCCCAGGTACAAGCAAAGAATCAACAAAGCCAGCCATCTGGACAGTCTCCCCAGGGCATGCGGTCTGTGAACAACATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055024-Ep300:NM_177821:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.179 A=NA C2=0.783
Domain overlap (PFAM):
C1:
PF0213511=zf-TAZ=PD(32.1=66.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACATTGTGCATCTTCTCGACA
R:
TCATGTTGTTCACAGACCGCA
Band lengths:
357-2003
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: