BtaINT0079851 @ bosTau6
Intron Retention
Gene
ENSBTAG00000018975 | KCNT1
Description
potassium channel, sodium activated subfamily T, member 1 [Source:HGNC Symbol;Acc:HGNC:18865]
Coordinates
chr11:103419189-103420308:+
Coord C1 exon
chr11:103419189-103419325
Coord A exon
chr11:103419326-103420244
Coord C2 exon
chr11:103420245-103420308
Length
919 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
TCAGACCTGGTGCTTTGCAGGAT
3' ss Score
6.87
Exon sequences
Seq C1 exon
GACTACTACGTCGTCATCCTGTGCCCCACGGAGATGGACATCCAGGTTCGCAGGGTCCTGCAGATCCCACTGTGGTCCCAGCGGGTCATCTACCTCCAGGGCTCCGCGCTCAAGGATCAGGACCTCATGCGGGCCAA
Seq A exon
GTGAGCGCCCGGTTGCGGGGAGGGTGCCGTCCTGCGCCGGCCAGCCTAAGCGGCGGCCCTGAGCACTACGCCAACCGGGAGGGGCCATCAGCCGGGCGGCAGCTCCAGCTTTGTGCCTGCTGCCCGCCCAGGCCAGCCGGGCCCCTCACTGACCCCCGCATAGCCTCCTGGGCAAGCCCACCAGCTCCTCTCCCACCTGCCTGGCTGTGTTTGGGGGCGAGGCGGGGGCTGCTACTGCTGCGCCTTGGGTGGGAAGCTGAGGCTGTGGGTGGATATTCTTCTAAAGACGAGGTGACAGGGTGACTTGAGGTAAGGAGACTGAGTTGTGAACAGAACTTTCCAGAATCTGCTGCAGCACATTCTGAGACACCCGGGAGGGGGCCCCCCCACCCCTGGAGGGCCCTCCCATCCCCCGCCACTCGTCACCATTTTATTACAGAGCCTGATGTAACCTTCGTGGTGAAACGGTAAAATGTGGGTTGTATGGAGGCCAAGGCGGCAGGAGCCCGGGTAGCCAGGGCCCCCATCCACCCATCTCCTGAGCCCAGGAATCAAGGGCCCAACAGGGACAAGCAGGGGGTGCAGGGTGATGGGGAGCGAGGCGCCAGGCCTCCCTGCCCTGGGGCAAGTGGACCCTCTCTCAGGCGGCCTTTCTGCAGCCAAGGGCTGGGGGCGGGGCATGAGGGGAGCAGACCTGGCCATCCCCAGACCTCTGGCAGCCTGTCCCAGGAGGGGACAGGACAGCAGGCGGGGTCCAGCATCTCTGCCACAAAGTGCACCCCCTTCCATGCCTCAGCCCCACCCTGAGTGTGTAGGGGCCCATCCTCAACCCGTCCAGGGCTGGTCAGAGTGAGGCGGGGTCCTGATGGCCCAGACAGGGAAGGCCGGTCCTGTGGTGCTCAGACCTGGTGCTTTGCAG
Seq C2 exon
GATGGACAATGGGGAGGCCTGCTTTATTCTCAGCAGCCGGAACGAGGTGGACCGCACCGCTGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000018975:ENSBTAT00000025261:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACGTCGTCATCCTGTGCC
R:
GTGCGGTCCACCTCGTTC
Band lengths:
190-1109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development