GgaINT0123763 @ galGal3
Intron Retention
Gene
ENSGALG00000001645 | KCNT1
Description
NA
Coordinates
chr17:8918138-8918502:-
Coord C1 exon
chr17:8918366-8918502
Coord A exon
chr17:8918202-8918365
Coord C2 exon
chr17:8918138-8918201
Length
164 bp
Sequences
Splice sites
5' ss Seq
CAAGTGAGC
5' ss Score
6.39
3' ss Seq
ATGCTGCTCTCTGCTTGCAGGAT
3' ss Score
11.24
Exon sequences
Seq C1 exon
GACTACTACGTGGTGATCCTCTGCCCCACGGAGATGGACATCCAGGTGCGGCGGGTACTGCAGATCCCTCTGTGGTCACAGCGGGTGATCTACCTGCAGGGCTCCGCGCTGAAGGACCAGGACCTCATGAGAGCCAA
Seq A exon
GTGAGCATTGGGGTGGGGGGTGGCAGGTGGCCATGGGGAGGGTCTTCCTGCAGCCACCCTGTTGTGCTGTGTGTGTCCCTATTGCTGTCACTAGATGGGTGATGATAGCCACCCTGTCCCATCTATGGGCTGGGTGCTGCATGGATGCTGCTCTCTGCTTGCAG
Seq C2 exon
GATGGACAATGGGGAAGCCTGCTTCATTCTCAGCAGCCGGAATGAGGTGGACCGCACAGCGGCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001645:ENSGALT00000038919:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACTACGTGGTGATCCTCTGC
R:
CTGTGCGGTCCACCTCATTC
Band lengths:
194-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]