BtaINT0081463 @ bosTau6
Intron Retention
Gene
ENSBTAG00000007963 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr11:88509944-88510442:+
Coord C1 exon
chr11:88509944-88510187
Coord A exon
chr11:88510188-88510353
Coord C2 exon
chr11:88510354-88510442
Length
166 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTCTTGATAAACTCTTTTAGGGA
3' ss Score
6.58
Exon sequences
Seq C1 exon
GTCCGAGTTCTGTTTTCAAAAGGCCCATTCATTGCCATTTTTGCAAGTGATCCACATATTATCATAAAGGCAATTAATCAGAACCTCAATAGTGTGCTTCGTGACTCAAACATCAATGGACATGACTATATGCGCAATATAGTTCATCTGCCCGTTTTCCTCAACAGCCGGGGACTAAGCAGTGCAAGAAAATTTCTTGTAACTTCAACAACTAATGGAGATGTTCCATGCTCGGATAATACAG
Seq A exon
GTAAAGATCAAGTTCCTCGGATACTTTGGGTTTGACGTGGTTCCATAGTTTTTCATTTTGCATCTCCTCTTACCTTGGAAAGTATTGTTCAAATTTCACAACTCTTTAAGTATCATTTACAGCAGAGTTTCAGGACAAATGGTGCTTTCTTGATAAACTCTTTTAG
Seq C2 exon
GGATGCAGGAAGATGCTGACAGAAGAGTTTCACAAAACAGCCTTGGAGAGATGACAAAACTTGGTAGCAAGACGGCCCTCAATAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007963:ENSBTAT00000061437:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=NA C2=0.467
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(15.8=100)
A:
NA
C2:
PF076939=KAP_NTPase=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGCTTCGTGACTCAAACA
R:
CGTCTATTGAGGGCCGTCTTG
Band lengths:
242-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development