HsaINT0087360 @ hg38
Intron Retention
Gene
ENSG00000134313 | KIDINS220
Description
kinase D interacting substrate 220 [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr2:8778639-8779139:-
Coord C1 exon
chr2:8778896-8779139
Coord A exon
chr2:8778728-8778895
Coord C2 exon
chr2:8778639-8778727
Length
168 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
GTCTTGATAAATTATTTAAGGGA
3' ss Score
4.05
Exon sequences
Seq C1 exon
GTCCGAGTTCTGTTTTCAAAAGGCCCGTTCATTGCCATTTTTGCAAGTGATCCACATATTATCATAAAGGCAATTAACCAGAACCTCAATAGTGTGCTTCGGGATTCAAATATAAATGGCCATGACTACATGCGCAACATAGTCCACTTGCCTGTGTTCCTTAATAGTCGTGGACTAAGCAATGCAAGAAAATTTCTCGTAACTTCAGCAACAAATGGAGACGTTCCATGCTCAGATACTACAG
Seq A exon
GTAAAGCTCAGGCTCCTAAAGTACTTTGAGTTTGAAATAGTTTTGTAGTTTCTTTATGGCGACTCTCCTTTTTACCTTGAAAAATATTGTTGTTGTTTCACATTTCTTTAAATATCATATACAACAGAATTTTGGTGTAAGTGATGCTGTCTTGATAAATTATTTAAG
Seq C2 exon
GGATACAGGAAGATGCTGACAGAAGAGTTTCACAGAACAGCCTTGGGGAGATGACAAAACTTGGTAGCAAGACAGCCCTCAATAGACGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000134313:ENST00000256707:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.405
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(15.8=100)
A:
NA
C2:
PF076939=KAP_NTPase=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTCAATAGTGTGCTTCGGG
R:
TGAGGGCTGTCTTGCTACCAA
Band lengths:
243-411
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development