GgaINT0078651 @ galGal4
Intron Retention
Gene
ENSGALG00000016409 | KIDINS220
Description
kinase D-interacting substrate, 220kDa [Source:HGNC Symbol;Acc:HGNC:29508]
Coordinates
chr3:95481185-95481702:-
Coord C1 exon
chr3:95481459-95481702
Coord A exon
chr3:95481274-95481458
Coord C2 exon
chr3:95481185-95481273
Length
185 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
3' ss Seq
TTTTTTTTTTCCCCTGATAGGAC
3' ss Score
11.13
Exon sequences
Seq C1 exon
GTACGAGTTTTGTTTTCAAAAGGCCCATTTATTGCTATTTTTGCAAGTGACCCACACATTATTATAAAAGCTATTAACCAGAATCTCAACAGTGTTCTACGTGATTCAAACATAAATGGACACGATTACATGCGAAATATAGTCCATTTGCCTGTTTTTCTGAATAGCCGAGGGCTTAGTAATGCAAAAAAGCTGATGGTAGCTTCAACAACCAATGGGGATGTTCCTTACACAGATAATGCAG
Seq A exon
GTAAAGTTATGCAAGAGAATAATACTGAGGTTACAAAAACAGTAGTAAAATCTGTTTCCTGGAACAAGCTAATTAAATTTGTAGATTATTAATGTTATTTTATGATGCAGTCACATGTATATGAGTGGAGAAAATGCCTTTTGATTTGTTTTTTGGTTTTTTTTTTTTTTTTTTTCCCCTGATAG
Seq C2 exon
GACTGCATGAAGAGATTGACAGAAGAGTTTCTCAGAACAGCCTTGGAGAGATGACCAAGCTTGGCAGCAAAACGGCTCTCAATAGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016409:ENSGALT00000026464:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=NA C2=0.067
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(15.8=100)
A:
NA
C2:
PF076939=KAP_NTPase=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAATCTCAACAGTGTTCTACGT
R:
CCGCCTATTGAGAGCCGTTTT
Band lengths:
256-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]