DreINT0085768 @ danRer10
Intron Retention
Gene
ENSDARG00000031240 | kidins220a
Description
kinase D-interacting substrate 220a [Source:ZFIN;Acc:ZDB-GENE-041014-170]
Coordinates
chr17:34963900-34965272:-
Coord C1 exon
chr17:34965032-34965272
Coord A exon
chr17:34963989-34965031
Coord C2 exon
chr17:34963900-34963988
Length
1043 bp
Sequences
Splice sites
5' ss Seq
ATGGTCAGT
5' ss Score
6.57
3' ss Seq
CTGACTCTCTCCATCTGTAGCAT
3' ss Score
9.75
Exon sequences
Seq C1 exon
GTTCGGGTGCTCTTTTCCAAAGGTCCCTTCATCTCCATCTTTGCCAGCGACCCTCATATCATCATTAAAGCCATAAACCAGAACCTCAACAGTGTGCTGCGCGACTCCAACATCAACGGCCATGACTACATGCGAAACATCATCCACCTGCCCGTGTTCCTCAACAGCCGTGGCCTCAGCACTGCTAAAAGACTCTGCATTTCCACAGCAGCCAATGGAGCCGATCAACTGAACAATGATG
Seq A exon
GTCAGTATAAAGAGACTGCTGAAGGCCAAACTTCAGAATTATTAGTCTCCCTGAATTATTAGGTCCCCAGTTTTTTTCCCCCAATTTCTGTTTAATGGTGGTACGCTTGCAGTGTGAGTGCAAAGCGCATCTGAACCCAATACTGAAGATGTGACGTCACTTTTAAGGGACTGTTTCATACGGATTTATTAATCATTCTTACTTTTCATTGTTCACCTCCTAATACATGCAGCACAAGGACTTTTATAATAATTTATTAGCTTCAAAGGTGGTGGATTTGTTCAGCAAAATATTTGACTGCGTGATATAACTAAACAATGCAAAGCGCATCTCTTCCTGTTATACTGAATAGTTGTATCATCAATGATGTAAGAGTGCTCAAGTTCGGAAGGTAAAAGCAGTGTGAGTGCAGGCTGTCGGGGGAGAGATGAGGGGGTACAATCGCGCTTTGGCGCAGTTTGAGGCAATGGTAACTCGAGTGGGTACGCCCTTAGGCCTACTTTTAAATGCAGAACAGGAGTGAGTTGTTGGTTGTAACTTGACAAGATGCTGAAGAACACAGCTGAAGTTTAAGTTTTTAAATATACATTTTACTCACTTCGGTATTTTGATTTAGAAAAATATTTAGATTAGAATATATTCGATTTTTGTCACTGATTTTCACTCAGTTGGCTAAGCATGGGCTTGTCACTGCATTAACACACACCTCTCCAGCTGATCCCAAAACTGCCTAAATTTGATCACTCTAGCCATTTTTTTTTTACCTAAATCGAATTTAATAAATCAAATCTGGCAACACCTCTTGCTTTACTCCATGCAACAGAACAAGAAAATAAACAAACATCTTGGTGCTCTTTAATGCCCTTTTGTGCTTAGCCAGAATGTATATGATTTGTTAATGTAATTTCTTTGATTTACATGTCAGCTATCTGTTTGATTTGTCATCTGCATTATTAATGGAGCAAGTGTGTTTAATATAGACCAACAGCTCATCTTTTCCTCTCTGATTTCTCCTCTGAACATCTGACTCTCTCCATCTGTAG
Seq C2 exon
CATGGCAAGAGGACGTGGACAGGAAGTTGTCTCAAAACAGTCTCGGCGATCAGGGCCGGCAGGGCAGCAAAACAGCACTGAACCGCCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000031240:ENSDART00000145664:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.533
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(15.6=100)
A:
NA
C2:
PF076939=KAP_NTPase=FE(5.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGGGTGCTCTTTTCCAAAGG
R:
GGCGGTTCAGTGCTGTTTTG
Band lengths:
326-1369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]