MmuINT0086552 @ mm9
Intron Retention
Gene
ENSMUSG00000036333 | Kidins220
Description
kinase D-interacting substrate 220 [Source:MGI Symbol;Acc:MGI:1924730]
Coordinates
chr12:25695760-25696453:+
Coord C1 exon
chr12:25695760-25696003
Coord A exon
chr12:25696004-25696364
Coord C2 exon
chr12:25696365-25696453
Length
361 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
GTCCCAATGCTTTCTTCCAGGAG
3' ss Score
8.64
Exon sequences
Seq C1 exon
GTCCGAGTTCTGTTTTCAAAGGGCCCTTTTATTGCCATTTTTGCAAGTGATCCACATATTATTATAAAGGCCATCAACCAGAACCTGAATAGTGTGCTTCGTGATTCAAATATAAATGGACATGACTATATGCGCAATATAGTTCATTTACCAGTTTTCCTTAATAGTCGTGGGCTTAGCAATGCAAGAAAATTTCTTGTAACTTCAGCAACAAATGGGGACATTTCGTGCTCAGAAGCAACAG
Seq A exon
GTAAGTATCAAGCCCTAGAGTGCTCAAGCTTGAAGGCAGCTTGTAGAAGGAGGGGTTTATTTAGCTATGCTCCAAAGGGATAAGAATTCAGCACCGTTATGGCGGGAAGCGTGGCAGTGGGGCTGGAGTAGCAAGCTGAGAGTTCCCATCTTACACTGCAAGTAGGAAACGGAGAGCAAACACAAAGGCATACATCTTCAAACTCTCAAAAGGCATCTCCAGGGACACACTTCCTGCAGCAAGCCTCATCCCCTAAGCCTCCCAAGCAGCAGCCTCAAGTGGGGCCCAGTGTTCAGACACAGGAGGCTCTGGGAGAAACTCATTTTAACCACCACAGTGCTGTCCCAATGCTTTCTTCCAG
Seq C2 exon
GAGTGCAGGAGGATGCTGACAGAAGAGTTTCACAGAACAGCCTTGGGGAGATGACAAAGCTTGGTAGCAAAACGGCCCTCAACAGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000036333-Kidins220:NM_001081378:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.037 A=NA C2=0.200
Domain overlap (PFAM):
C1:
PF076939=KAP_NTPase=FE(15.8=100)
A:
NA
C2:
PF076939=KAP_NTPase=FE(5.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTCTGTTTTCAAAGGGCCCT
R:
CCTTCTGTTGAGGGCCGTTTT
Band lengths:
328-689
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: