BtaINT0082116 @ bosTau6
Intron Retention
Gene
ENSBTAG00000021336 | KIF5A
Description
kinesin family member 5A [Source:HGNC Symbol;Acc:HGNC:6323]
Coordinates
chr5:56238877-56239476:-
Coord C1 exon
chr5:56239367-56239476
Coord A exon
chr5:56238979-56239366
Coord C2 exon
chr5:56238877-56238978
Length
388 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGA
5' ss Score
5.73
3' ss Seq
ATACCTCTTGCTCTCCGCAGCCT
3' ss Score
9.66
Exon sequences
Seq C1 exon
AAGGCCCTGGAGCTGCAGATGGAGAGCCACCGGGAGGCCCATCACCGGCAGCTGGCCCGGCTCCGGGACGAGATCAATGAGAAGCAGAAGACCATTGATGAGCTCAAAGA
Seq A exon
GTAAGAGTTCCCCAGGGTGGCTCCAGTCTCCACCTGGTCCCCTCATCTTCCTGGGCCCACGCACACACTCCCTCTGGCACCAGGATCCAGTTCTTTAACTTCCATGGATCATGCCCCAGCAAAGACATGACTTTGCAGTCCAGCTCCAGGAGGTACAAGGAGTGAGGACTAGTCCCTATGCTCCAGGCTTCTCTGATTTGATAGTTCAGGGCCCCTTATTCTGCTGTGGAAGCAGTAGCCTGAGTCCGCCTCTAATATACCCTGAAGTAGATGTGTCAACCCTATGAGGACTCATGTGTGCAAGAAGGAAAGTGTTGAAGGAGTCAGTCTCCTCTTTGTCCCTCGCTGACATCTCCTTGTTCTCCCCAATACCTCTTGCTCTCCGCAG
Seq C2 exon
CCTGAATCAGAAACTCCAGTTAGAGCTGGAGAAGCTCCAGGCTGACTACGAGAAGCTGAAGAATGAAGAACATGAGAAAAGCACCAAACTCCAGGAGCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021336:ENSBTAT00000028441:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTGGAGCTGCAGATGGAGAG
R:
GTCAGCTCCTGGAGTTTGGTG
Band lengths:
207-595
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]