HsaINT0088098 @ hg38
Intron Retention
Gene
ENSG00000155980 | KIF5A
Description
kinesin family member 5A [Source:HGNC Symbol;Acc:HGNC:6323]
Coordinates
chr12:57576269-57576862:+
Coord C1 exon
chr12:57576269-57576378
Coord A exon
chr12:57576379-57576760
Coord C2 exon
chr12:57576761-57576862
Length
382 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
TACCTTCTGATGCTCTGTAGCCT
3' ss Score
6.24
Exon sequences
Seq C1 exon
AAGGCTCTGGAGCTGCAGATGGAGAGTCACCGGGAGGCCCATCACCGGCAGCTGGCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCATTGATGAGCTCAAAGA
Seq A exon
GTAAGGGTTCCCAAGGGCGACTCCAGCCCCTCCCGGGTCCTGTCACCTTGCTGTATTGACTCACATGTCCCCTCTGGGTCTGATTCTTTAACATCCATGTGTCATTCCCTCAACAATGCCACAACTTCGTAGCCCCACCTCAGGAGACACATGGAATAACGACTAGTCCCTATCCTTGAGGGTCCCAGGATTAGAGAGGTCAGGGTTCCTGGCTCTGTCATGGAAACAGTGGCCTGAGTCTGCCTCTGGTATCTGAAGGTGGACACATCAATTCTAACTGGACTCACTCGTTCAAAAAGGAAGAAGTTTGAAGAGCTGGCCTTCCCTTCCCCCTCATTAACATCTTTCTCCCCCATCTCCATTACCTTCTGATGCTCTGTAG
Seq C2 exon
CCTAAATCAGAAGCTCCAGTTAGAGCTAGAGAAGCTTCAGGCTGACTACGAGAAGCTGAAGAGCGAAGAACACGAGAAGAGCACCAAGCTGCAGGAGCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155980:ENST00000455537:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115593=ADIP=PU(0.7=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCTGCAGATGGAGAG
R:
GCTCCTGCAGCTTGGTGC
Band lengths:
203-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development