RnoINT0079489 @ rn6
Intron Retention
Gene
ENSRNOG00000005299 | Kif5a
Description
kinesin family member 5A [Source:RGD Symbol;Acc:1303035]
Coordinates
chr7:70525768-70526681:-
Coord C1 exon
chr7:70526572-70526681
Coord A exon
chr7:70525870-70526571
Coord C2 exon
chr7:70525768-70525869
Length
702 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
TTATGTCCCACCCTCCCTAGCCT
3' ss Score
6.81
Exon sequences
Seq C1 exon
AAGGCCCTGGAACTACAGATGGAGAATCATCGTGAGGCCCATCACCGGCAGCTGGCCCGCCTCCGAGATGAGATCAATGAGAAACAGAAGACCATTGATGAGCTTAAAGA
Seq A exon
GTAAGGGTCTTAGATGTGGCTCTAGTGTCTACCCAGTCTACACCACTCCAGCCATCCTTCTGGATCCTTAATGTCCAAGGTCATTTCCTCAACAATGACACTCCCTGAGGCCCAGTCTCAAGAGACATAAGAAGGGTTAGAGAGGTGGCTCTGTAGTTAAGAGCCCTGGCTGTTCTTCCAGAGGACCTGGGTTTGATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAACTCCAGTCCCAGTGGATCCGACACCCTCTTCTGGCCTCCTTGGGTACCAGGCACACACAGAGCACACACACATACTTGCAAGCAAAACACTCATGCACATAAGAAATTAATTAGAAGACAAAGGTAGGGGCTGGGGATTTAGCTCAGGGGTAGAGCGCTTACCTAGGAAGCACAAGGCCCTGGGTTCGGTCCCCAGCTCCGAAAAAAAGAACAAAAAAAAAAAAAAAAAAAGAAGACACAGGTAGTTAGAATTAGACCTGCCCTTGAGACCTTTATGATTGGAGTACTCCGGCTCCCATGTTGCCATGAAAATGGTAGCCAGTGTGTACCCCCGATAGATCCAGTGTGTACCCCTGATATCTGAAGTCCGGTGCATCAGGTCTCACTGGGACGTGTAGAAGACAAAAGTGCGAGGGACCGAGCTTCCTTTTCCCCCTTCAGTATCTCTTTATGTCCCACCCTCCCTAG
Seq C2 exon
CCTGAACCAGAAGCTCCAGTTAGAGCTGGAGAAGCTTCAGGCTGATTACGAGAGACTGAAGAACGAAGAGAACGAGAAGAGTGCCAAGCTCCAGGAGCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005299:ENSRNOT00000007721:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=NA C2=0.400
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGCCCTGGAACTACAGATGG
R:
CTCCTGGAGCTTGGCACTCTT
Band lengths:
206-908
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]