HsaINT0088098 @ hg19
Intron Retention
Gene
ENSG00000155980 | KIF5A
Description
kinesin family member 5A [Source:HGNC Symbol;Acc:6323]
Coordinates
chr12:57970052-57970645:+
Coord C1 exon
chr12:57970052-57970161
Coord A exon
chr12:57970162-57970543
Coord C2 exon
chr12:57970544-57970645
Length
382 bp
Sequences
Splice sites
5' ss Seq
AGAGTAAGG
5' ss Score
5.42
3' ss Seq
TACCTTCTGATGCTCTGTAGCCT
3' ss Score
6.24
Exon sequences
Seq C1 exon
AAGGCTCTGGAGCTGCAGATGGAGAGTCACCGGGAGGCCCATCACCGGCAGCTGGCCCGGCTCCGGGACGAGATCAACGAGAAGCAGAAGACCATTGATGAGCTCAAAGA
Seq A exon
GTAAGGGTTCCCAAGGGCGACTCCAGCCCCTCCCGGGTCCTGTCACCTTGCTGTATTGACTCACATGTCCCCTCTGGGTCTGATTCTTTAACATCCATGTGTCATTCCCTCAACAATGCCACAACTTCGTAGCCCCACCTCAGGAGACACATGGAATAACGACTAGTCCCTATCCTTGAGGGTCCCAGGATTAGAGAGGTCAGGGTTCCTGGCTCTGTCATGGAAACAGTGGCCTGAGTCTGCCTCTGGTATCTGAAGGTGGACACATCAATTCTAACTGGACTCACTCGTTCAAAAAGGAAGAAGTTTGAAGAGCTGGCCTTCCCTTCCCCCTCATTAACATCTTTCTCCCCCATCTCCATTACCTTCTGATGCTCTGTAG
Seq C2 exon
CCTAAATCAGAAGCTCCAGTTAGAGCTAGAGAAGCTTCAGGCTGACTACGAGAAGCTGAAGAGCGAAGAACACGAGAAGAGCACCAAGCTGCAGGAGCTGAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155980-KIF5A:NM_004984:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.784 A=NA C2=0.429
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF115593=ADIP=PU(0.7=2.9)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGAGCTGCAGATGGAGAG
R:
GCTCCTGCAGCTTGGTGC
Band lengths:
203-585
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)